Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 4e-13 seq4 86.0 5e-12 >seq1 Length=4966325 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | ||||| || || || |||||||||||| Sbjct 2851909 ATACCACCACGAAGGCGGAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCG 2851968 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| ||||| || || |||||| |||| | ||||| ||||| ||| Sbjct 2851969 GATAGAGTACGTCCATCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGA 2852028 Query 114273 GGAATGCCTTCTTTGTC 114289 ||||||||||| ||||| Sbjct 2852029 GGAATGCCTTCCTTGTC 2852045 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | ||| || || || || |||||||| || Sbjct 2851398 ATACCACCACGAAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCC 2851457 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || | || || || ||| ||||||||||||| ||||||||| Sbjct 2851458 GAAAGTGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGA 2851517 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| |||||| |||| | || | ||||| | || || Sbjct 2851518 GGGATACCCTCCTTGTCCTGAATCTTCGACTTTACGTTGTCGATCGTGTCCGACGACTCA 2851577 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| ||||| || || || || |||||||| Sbjct 2851578 ACCTCCAGCGTGATAGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 2851627 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || ||| | || | || || || || ||||||||||| || Sbjct 2851626 ATACCACCGCGCAGACGCAGAACGAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCA 2851685 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||| ||||| || || || ||| |||| | ||||| ||||| || Sbjct 2851686 GAGAGTGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGG 2851745 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| |||||| || | | |||| || |||| || ||| Sbjct 2851746 GGAATGCCCTCCTTGTCTTGAATCTTGGACTTGACGTTGTCAATAGTATCGGATGACTCG 2851805 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCA 114360 || || | ||| | || |||||||||| Sbjct 2851806 ACTTCGAGGGTGATGGTCTTGCCGGTCA 2851833 >seq4 Length=1737036 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | ||| || ||| ||||| || || ||| Sbjct 1018840 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCA 1018781 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||| ||||||||||||| |||||||| |||||||| || ||||| || Sbjct 1018780 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTGC 1018734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420133237671924