Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 297 4e-75 seq19 255 1e-62 >seq3 Length=2655511 Score = 297 bits (328), Expect = 4e-75 Identities = 888/1363 (65%), Gaps = 47/1363 (3%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| |||||||| | ||||| || || ||| | ||| | || || Sbjct 1395223 GTTGACAACCTGGAACTCTCCAGCGAGCACACGACGAGAGTAAATGTTCGAGGTGTAGGG 1395164 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| ||||||| || ||||||| || || || ||||| |||| || Sbjct 1395163 CTCGAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTAGAGGCTGTAGGCATAGGCGCAAC 1395104 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCC---AGTC 244266 |||||| || | || |||| | || | | ||| ||| ||| || | Sbjct 1395103 GAGCAGAGAATTGCGGACACCGTAC-------TGTGCAATCTT--CTCCTTCAGCGAGGC 1395053 Query 244267 CCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT 244326 ||| | || ||||||| | || ||| |||||||||||| |||| ||| | |||| Sbjct 1395052 CCA---GTCCCAGAGGTCAGTGGGTGTGACGCCCCACATGTCGTACTGAAGCTGGCCCTG 1394996 Query 244327 GCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACA-GC 244385 ||| ||| ||||||||| || | ||||| || || ||| || || | Sbjct 1394995 CGAGACAGGGGAGCCCTCGTACGTAGTATAGGGGCCAAACTCCTTAGCCGTCTCGCAAGA 1394936 Query 244386 TCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT 244445 ||| ||| |||||| |||||| |||||||||||| |||| | | | | Sbjct 1394935 AGAGGTCAAGG-CGGCGTGGTAGATAGTCTCGAAGATCTGGGTGTTGAGTTT-----CTT 1394882 Query 244446 TGCCGCAGGTGA-----AGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCAC 244500 ||| |||| || |||| | || | | ||| |||| || || ||||| || Sbjct 1394881 AGCCTCAGGCGACTCGAAGGGCAGGCGAAGAGCGAGGAAAGCGTCAGCAAGACCCTGGAC 1394822 Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAA 244560 || | || || || ||||| || |||| ||| || || || ||||| Sbjct 1394821 ACCAAGACCAATAGGCCTGTGACGGAAGTTGCTGCGGCGTGCCTCCTCAACTGGGTAGTG 1394762 Query 244561 GTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAG 244620 ||| | ||||| | ||||||||||||||| ||| | ||||||| ||| ||| Sbjct 1394761 ATTGACCTCGATGATCTTGTTGAGGTTGCGTGTGCAGACCTGGACGACCTCGTGAAGCTT 1394702 Query 244621 CTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGC 244680 || || ||| |||| || ||| | || ||| || || | || || Sbjct 1394701 CTTGAAATCGAACTC----------TCCGCGCTTGTAATCG--ACGAAAGAGGGAAGAGC 1394654 Query 244681 GACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGT 244740 |||| |||||||||||||| || ||||| |||| ||||| | || ||||| || Sbjct 1394653 GACGGAAGCCAGGTTGCAGACAGCGACCTCATCCGGTGCAGTGTATTCGATGATCTCAGT 1394594 Query 244741 GCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGC 244800 ||||||||| || |||||| || |||| || || ||| ||| |||| || Sbjct 1394593 GCAGAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGC 1394534 Query 244801 GTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCA 244860 |||||||||||||||||||| || |||||| ||| || | || | | || ||| Sbjct 1394533 ATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATGGCGTACCA 1394474 Query 244861 GAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAG 244920 ||| | | ||| ||| ||| ||| |||| || |||||| ||| || Sbjct 1394473 GAGCTTCTGAGCACGGACAGTCTCACGACCCTTACCAAGCTTCTCGTACTTCTCGTAAAG 1394414 Query 244921 GGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAG 244980 ||| ||||||| ||| | || || | |||||||||||| ||||||||||| Sbjct 1394413 GGCAACGAACTCATCGCCGTAAACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAG 1394354 Query 244981 ACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTG 245040 | ||||||||||| |||| ||| | |||||| ||||| ||||| ||||| || || | Sbjct 1394353 AGTCCACTCGCCGTTCTCCTGGACACGCTGCATAAAGAGATCGGGAATCCACAGAGCGTA 1394294 Query 245041 GAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTC 245100 |||||| || | | | ||| ||| ||| |||||||||||| || | ||| | Sbjct 1394293 GAAGAGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCC 1394234 Query 245101 AAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCC 245160 |||||||| ||||||| ||||| | ||||| || | || || || ||||||||||| Sbjct 1394233 GAAGACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAATGCACCAGGGCGCTTGTTGCC 1394174 Query 245161 TCCCTGGTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 |||||||| | ||| || | |||| | | || || | || | | |||| Sbjct 1394173 ACCCTGGTCGA-CATAGCGGGCAGTGTTGTTGTAAACACGGAGCATGGGAATCAGACCGT 1394115 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCC---TGAGGTTGCTGATGG 245276 | || |||||||| || ||| |||| ||| || | | || ||| | | || Sbjct 1394114 TCGATGTTCCGTTGGTTCCTCCGATATAGGAGCCAGTGGCACGAATGCGGTGGACGTTG- 1394056 Query 245277 ACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTA 245336 | ||| | ||||| || ||||||||| | ||||| |||||| ||||| | Sbjct 1394055 --AGGCCAATACCGCCAGCAGTCTTGGAGATCAACGCGCATGTCTTGAGTGTGTCGTAGA 1393998 Query 245337 TGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGG 245396 | ||||| |||||||| |||||||| || || |||||||| |||| ||| || | Sbjct 1393997 TACCCTCAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGTGGGGACG 1393938 Query 245397 GGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 | | | | |||||| || || || ||||| || ||||| Sbjct 1393937 GTGTACCAGCGTTGAAGAGCGTCGGCGACGCGTGTGTGAAGTA 1393895 >seq19 Length=853957 Score = 255 bits (282), Expect = 1e-62 Identities = 602/908 (66%), Gaps = 76/908 (8%) Strand=Plus/Minus Query 42301 TCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGG 42360 ||||| |||||||||||||| || || ||||||||| || ||||| || || Sbjct 676548 TCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAAGAGATCGATCTCT 676489 Query 42361 CCAAGGACACGGCCGGCTGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAA 42417 ||||||||| || |||| | | || || |||| || ||| || Sbjct 676488 CCAAGGACATCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGTTTCTTCATCTCCC 676429 Query 42418 ACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGT 42477 || | || ||||||||||| ||||| || ||||| ||||| |||||||| | | | | Sbjct 676428 ACGTCCTCGCCTTCTTCGCTGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAGCGCT 676369 Query 42478 TCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAG 42537 || || ||||| ||| | |||||| || |||||||||||||||||||| || | Sbjct 676368 TCTCGAGCGAGGTACAGATCCCTGAGGCACGATGCTTCTACGGCTTCCAGATCATGATGG 676309 Query 42538 AGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCG 42597 ||||||| ||| ||||| ||| | || || |||| |||||| || || Sbjct 676308 AGAACGTCCACGCTGAGACATACTCTCTCCTCATCGACACCTACATCAGCGAGCCTAAGC 676249 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGA-----------------------CG----- 42629 |||||| |||||||| || || || | || Sbjct 676248 AGCGTACATACCTGTTCAACGCTATTGATAACAGTAAGCCACTGCACATCATACGTCTCA 676189 Query 42630 --------------ATGCCCT--------GCATCAAGAAGAAGGCGGACTGGGCGCTCAA 42667 ||||||| ||||| |||||||| |||||||| || Sbjct 676188 TCACCTGTACTGACATGCCCTAGTTCCCTGCATCCGTAAGAAGGCTGACTGGGCCCTGCG 676129 Query 42668 CTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCG 42726 ||||| | | || | | || |||| | | | || || || || ||||||| | Sbjct 676128 ATGGATTTCT-GACAAGAACTCCACTTTCGCCAACCGTCTCGTTGCTTTCGCCGCCGTTG 676070 Query 42727 AGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCG 42785 | || ||||||||| || | ||||| |||||||||||||| ||| || ||| || Sbjct 676069 AAGGTATCTTCTTCAGTGGTTCGTTCGCGTCCATCTTCTGGCTGAAGAAGCGTGGTCTC- 676011 Query 42786 ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGAC 42845 |||||||| ||||| ||||| ||||| |||||| | |||||||| |||| | ||| Sbjct 676010 ATGCCCGGTCTCACATTCTCCAACGAGCTCATCTCTCGTGACGAGGGCATGCACACAGAC 675951 Query 42846 TTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCG-AAGGAGCGGGTCCG 42904 ||||| ||||| || ||||| | || | || |||| | || ||| ||| Sbjct 675950 TTTGCTTGCCTTCTCTTCTCT---CTGCTGAATAACC-GCCCAAGCAAAGAGGCTGTCGC 675895 Query 42905 GGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGT 42964 || |||||||| |||||||| |||||| |||||||||| | | | || ||| | Sbjct 675894 AGCTATCATCACCGAGGCCGTCACAATCGAGCAGGAGTTCCTGTCTGACGCCCT-CCCTT 675836 Query 42965 GTCC-CTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACC 43023 || | ||| ||||||||||| || |||||||||| |||||||| ||| |||||| || | Sbjct 675835 GTGCGCTGCTCGGCATGAACGCCGGCCTCATGTGCCAGTACATCGAGTTCGTCGCTGATC 675776 Query 43024 ATCTCCTGTGCCAGATGGGTCT---CAGCCGC---CTCTACAACACGCCGTGCCCCTTCG 43077 || |||| ||| ||| || || | | ||||||| | | |||||||| Sbjct 675775 GCCTACTGT------TGGCTCTTGGCAACCCCAAGCACTACAACGCTACCAACCCCTTCG 675722 Query 43078 ACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCG 43137 |||| ||||||||||||||| | | |||||||||||||| |||||||||||||| | | Sbjct 675721 ACTTCATGGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTG 675662 Query 43138 ACTACCAG 43145 |||||||| Sbjct 675661 ACTACCAG 675654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944336520437520