Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq19 105 1e-17 seq5 93.3 9e-14 >seq19 Length=853957 Score = 105 bits (116), Expect = 1e-17 Identities = 293/442 (66%), Gaps = 12/442 (3%) Strand=Plus/Minus Query 243318 CGTTGAAGGTATTCTGTTTTCCGGGAGT--TTCTGCG-CCATCTTTTGGCTGCGGAACAA 243374 |||||||||||| || | ||| | | | ||| ||| ||||||| |||||| ||| Sbjct 676074 CGTTGAAGGTAT-CT-TCTTCAGTGGTTCGTTC-GCGTCCATCTTCTGGCTGAAGAAGCG 676018 Query 243375 AGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCA 243434 ||| | ||||| || ||| | || |||||| ||||| ||| ||||||||| | || Sbjct 676017 TGGTCTCATGCCCGGTCTCACATTCTCCAACGAGCTCATCTCTCGTGACGAGGGCATGCA 675958 Query 243435 CCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACGG- 243493 | | | || | | ||| | | || ||| ||| || | ||| | || || Sbjct 675957 CACAGACTTTGCTTGCCTTCTCTTCTCTCTGCT---GAATAACCGCCCAAGCAAAGAGGC 675901 Query 243494 --TCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTAT 243551 || | |||||||| || || || || ||| |||| ||| | | ||||| | Sbjct 675900 TGTCGCAGCTATCATCACCGAGGCCGTCACAATCGAGCAGGAGTTCCTGTCTGACGCCCT 675841 Query 243552 TCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGC 243611 || || ||| | ||||||||| | | |||||| | ||||||||||| ||||| || Sbjct 675840 CCCTTGTGCGCTGCTCGGCATGAACGCCGGCCTCATGTGCCAGTACATCGAGTTCGTCGC 675781 Query 243612 CGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGC 243671 || ||| | | | || ||||| | || |||||| | | |||||||| | Sbjct 675780 TGATCGCCTACTGTTGGCTCTTGGCAACCCCAAGCACTACAACGCTACCAACCCCTTCGA 675721 Query 243672 CTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGA 243731 ||| |||||| ||| |||||| || || || ||||||||||| ||||| || |||| Sbjct 675720 CTTCATGGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGA 675661 Query 243732 TTATCAACGCCCTGGTGTGATG 243753 || || ||||||| ||| Sbjct 675660 CTACCAGAAGGCTGGTGTCATG 675639 >seq5 Length=1634729 Score = 93.3 bits (102), Expect = 9e-14 Identities = 202/302 (67%), Gaps = 3/302 (1%) Strand=Plus/Plus Query 333692 AAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTT 333751 ||| | |||||| ||| |||||| || ||| || || |||| || || ||||| Sbjct 1144075 AAGAGTGTAGTAGCTCTTGCCTTCGGGCTTCTGCTTGACAAAGTCGGCAAGGTTACCCTT 1144134 Query 333752 GTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAG 333811 ||| || ||| || ||||||||||| || ||||| ||||| ||||| Sbjct 1144135 GTAGCAGACCAACTTC---TTCTGTTCGTAATGGTAGATGTCTGTGCAGACAGCATCGAG 1144191 Query 333812 GAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTC 333871 ||| || |||||||| || ||||||| || | | || | || | | ||||| || Sbjct 1144192 GAATCCAGAGTCGTGGGAAACAATCAAGCTGGTGATCTCAGTGTGGCTCTTGAGGTACTC 1144251 Query 333872 AATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAG 333931 ||||| ||||| | ||| | ||| ||||| |||||||| || | || | Sbjct 1144252 CTGAAGCCAAGCGACGTTGGCAACATCCAAATGATTGGTAGGCTCGTCGAGCAACAGAAC 1144311 Query 333932 CTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991 | ||| || ||||| ||||| || | |||||| ||||| ||||| ||||| || || Sbjct 1144312 GTCAGCGCGCATAAGCATAGCACGGGCCAAAGCGAGCTTCATCTTCCAACCTCCAGACAG 1144371 Query 333992 AG 333993 || Sbjct 1144372 AG 1144373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102876792342450