Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1 125 8e-24 >seq1 Length=4966325 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| | || || ||| |||| || ||||||||||| || || Sbjct 2851208 CTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGCCCGTCTTCCAGCTGCTTACCCGCAAA 2851267 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | ||| | | |||||| ||| ||| || |||| ||| Sbjct 2851268 GATAAGACGCTGCTGGTCAGGTGGGATACCCTCCTTATCCTGGATCTTAGACTTGA-CGT 2851326 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||||||| || || || || | |||||||| ||||| || || ||||| | Sbjct 2851327 TGTCGATCGTGTCGCTAGACTCAACCTCCAATGTGATGGTCTTGCCGGTGAGTGTCTTGA 2851386 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 2851387 CGAAGATTTGCAT 2851399 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | || |||||| || || ||||| || | || || || | Sbjct 2851412 ACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGTGTGCGGCC 2851471 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || | |||||| || ||||| ||||| ||||||||||| | || | | |||||| Sbjct 2851472 GTCCTCCAACTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTT 2851531 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| | || | | ||| | | | |||||| ||| || || || | ||||| Sbjct 2851532 GTCC-TGAATCTTCGACTTTACGTTGTCGATCGTGTCCGACGACTCAACCTCCAGCGTGA 2851590 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||| || || ||||| || ||||| ||||| Sbjct 2851591 TAGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 2851627 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| || | |||| |||| |||||| ||||| ||||| |||| || || || | Sbjct 2851640 ACGCAGAACGAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGTGTACGGCC 2851699 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || ||||| || | ||||||||||| | || | || |||||| Sbjct 2851700 ATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTT 2851759 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 42170 || | ||| | || | |||| ||| | | | || ||| || || || |||| ||| Sbjct 2851760 GT-CTTGAATCTTGGACTTGA-CGTTGTCAATAGTATCGGATGACTCGACTTCGAGGGTG 2851817 Query 42171 ATGGTTTTGCCCGT 42184 ||||| ||||| || Sbjct 2851818 ATGGTCTTGCCGGT 2851831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543211258633680