Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3 248 9e-61 >seq3 Length=2655511 Score = 248 bits (274), Expect = 9e-61 Identities = 625/944 (66%), Gaps = 6/944 (1%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | | ||| | ||||| || ||||| || || || ||| || | ||| Sbjct 1393730 AACTACCAGTTCTTCGGATTCAAGACATTGGAGCGCTCATATCTGCTCCGCATCAACGGC 1393789 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | |||| ||||||| || || || |||| ||||| ||||| | || || ||| | Sbjct 1393790 AAGGTTGCCGAGCGCCCCCAGCACATGCTCATGCGTGTCGCTGTTGGCATCCACATGGAG 1393849 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||||| ||| | | | | | | | ||||| | | ||| | || || Sbjct 1393850 GACATCGAGAAGGCTATCGAGACATACGACTACATGTCGCAGAAGTACTTCACACACGCG 1393909 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | ||||| || |||||||| || || ||| ||||||||||| || || ||||| || Sbjct 1393910 TCGCCGACGCTCTTCAACGCTGGTACACCGTCCCCACAGATGTCATCCTGCTTCCTCATC 1393969 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| ||| || || | ||||| |||||| || ||| || Sbjct 1393970 GAC-ATGAAGGAAGACAGCATTGAGGGTATCTACGACACACTCAAGACATGCGCGTTGAT 1394028 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || || || || || || ||| |||||| | | ||||||| || ||||| Sbjct 1394029 CTCCAAGACTGCTGGCGGTATTGGCCTCAACGTCCACCGCATTCGTGCCACTGGCTCCTA 1394088 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| | || ||||| || || || ||||| || | || |||||||| || | |||||| Sbjct 1394089 TATCGGAGGAACCAACGGAACATCGAACGGTCTGATTCCCATGCTCCGTGTTTACAACAA 1394148 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || ||||| || ||||||||||| | | | ||| | || || |||| || Sbjct 1394149 CACTGCCCGCTATGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCATTTGCCATCTACCT 1394208 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 |||||| |||||||| ||||| | ||| |||||||| | |||||||||||||| || Sbjct 1394209 CGAGCCGTGGCACGCTGACGTCTTCGGCTTCCTCGACCTGAGGAAGAACCACGGCAAGGA 1394268 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 || | || | || |||||||||||||| ||| | || || || |||||| | || Sbjct 1394269 GGAGGTTCGTGCTCGCGATCTCTTCTACGCTCTGTGGATTCCCGATCTCTTTATGCAGCG 1394328 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 ||| || | ||| || |||| ||| | || ||||| || || ||||| || | || Sbjct 1394329 TGTCCAGGAGAACGGCGAGTGGACTCTCATGTGCCCCAACGAGTGCCCCGGCCTCGCTGA 1394388 Query 94374 CGTTT--GTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCC 94431 ||||| | ||| | | || | | | | || | ||||| || || |||| Sbjct 1394389 CGTTTACGGCGAT-GAG-TTCGTTGCCCTTTACGAGAAGTACGAGAAGCTTGGTAAGGGT 1394446 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | || | | |||| |||||| ||| | || | || | ||| ||||| Sbjct 1394447 CGTGAGACTGTCCGTGCTCAGAAGCTCTGGTACGCCATTCTTGAGGCTCAGACCGAGACT 1394506 Query 94492 GGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 |||| |||| ||| | | |||||| ||| |||| ||| ||||||| || ||||| Sbjct 1394507 GGTAACCCCTTCATGCTCTACAAGGATGCTGCCAACAGGAAGAGCAACCAGAAGAACCTC 1394566 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 || ||| ||||| || || ||||| ||||| |||| || ||| | ||||| ||| Sbjct 1394567 GGTACCATCCGCAGCTCCAACCTCTGCACTGAGATCATCGAATACACTGCACCGGATGAG 1394626 Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGT 94655 | ||||| || ||||||| ||| || || || ||||||| Sbjct 1394627 GTCGCTGTCTGCAACCTGGCTTCCGTCGCTCTTCCCTCTTTCGT 1394670 Score = 113 bits (124), Expect = 4e-20 Identities = 194/279 (70%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154 ||||| || || || ||||| || ||||| || ||||||| |||||||||||||||| Sbjct 1395098 CTGCTCGTTGCGCCTATGCCTACAGCCTCTACCTCGCAGATTCTTGGCAACAACGAGTGC 1395157 Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTC 95214 ||||| |||| |||||| ||| | ||| | || |||||||| || || |||| || Sbjct 1395158 TTCGAGCCCTACACCTCGAACATTTACTCTCGTCGTGTGCTCGCTGGAGAGTTCCAGGTT 1395217 Query 95215 ATCAACAAGCACCTCCTACGGGACC-TGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAA 95273 ||||| | || ||||| || || | ||||| | ||| || || | || Sbjct 1395218 GTCAACCCTTGGTTGCTCAAGGACCTTGTCGAC-ATGGGTCTCTGGACCGAGAACATGAA 1395276 Query 95274 GAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACAT 95333 ||||| | | || || ||| ||||| |||||| | || || || || || Sbjct 1395277 GAACCGCATCATTGCCGAGGGTGGATCCATCCAGCGCATCCCTAACATTCCTGACGAGAT 1395336 Query 95334 CAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 ||||| ||||||||||| || ||||| ||| ||||||| Sbjct 1395337 CAAGGTTCTCTACAAGACTGTCTGGGAAATCTCGCAGCG 1395375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494721796222920