Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq19 134 1e-26 seq3 127 2e-24 seq1 102 8e-17 >seq19 Length=853957 Score = 134 bits (148), Expect = 1e-26 Identities = 252/362 (70%), Gaps = 15/362 (4%) Strand=Plus/Minus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 |||||||| || || ||| ||||||| | || || || ||||| || ||||||| ||| Sbjct 676010 ATGCCCGGTCTCACATTCTCCAACGAGCTCATCTCTCGTGACGAGGGCATGCACACAGAC 675951 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTG 52601 ||||| ||||| || | | | || | ||| || | | | | || ||| Sbjct 675950 TTTGCTTGCCTTCTCTTCT-----CTC-TG-CTGAATAACCGCCCAAGCAAA-GAGGCTG 675899 Query 52602 ----AGC-ATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGC 52656 ||| || ||| ||||| || | ||||| ||||||| | | | ||| || | Sbjct 675898 TCGCAGCTATCATCACCGAGGCCGTCACAATCGAGCAGGAGTTCCTGTCTGACGCCCTCC 675839 Query 52657 CGGTCGAGCTGCTGGGCATGAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCG 52715 | | |||||| ||||||||||| | | | ||||||| ||||||||||||| || || Sbjct 675838 CTTGTGCGCTGCTCGGCATGAACGC-CGGCCTCATGTGCCAGTACATCGAGTTCGTCGCT 675780 Query 52716 GATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAG 52775 ||||| || || || || || | || ||| ||| ||||||| ||| || || || Sbjct 675779 GATCGCCTACTGTTGGCTCTTGGCAACCCCAAGCACTACAACGCTACCAACCCCTTCGAC 675720 Query 52776 TTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAG 52835 || ||| | ||||| ||||||| |||||||||||||| ||||||||||| || || || Sbjct 675719 TTCATGGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGAC 675660 Query 52836 TA 52837 || Sbjct 675659 TA 675658 >seq3 Length=2655511 Score = 127 bits (140), Expect = 2e-24 Identities = 417/642 (65%), Gaps = 7/642 (1%) Strand=Plus/Minus Query 153820 TCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGAC 153879 ||||||| |||||| || | ||||| |||||||| ||| ||||||||||| | Sbjct 1394432 TCTCGTACTTCTCGTAAAGGGCAACGAACTCATCGCCGTAAACGTCAGCGAGGCCGGGGC 1394373 Query 153880 ACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGAT 153939 ||| | || ||||| || | |||| ||| | | ||| || |||| || |||| Sbjct 1394372 ACTCGTTGGGGCACATGAGAGTCCACTCGCCGTTCTCCTGGACACGCTGCATAAAGAGAT 1394313 Query 153940 CCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGC 153999 | || | ||| || ||||| | ||| ||||| || |||||| ||| ||| Sbjct 1394312 CGGGAATCCACAGAGCGTAGAAGAGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCT 1394253 Query 154000 GTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGG 154059 |||| | ||| | || ||| ||| |||||||| || || | ||||| ||| | | Sbjct 1394252 TCCTCAGGTCGAGGAAGCCGAAGACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAATG 1394193 Query 154060 CACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCA 154116 |||| ||| || || ||||| ||||| | ||| | | |||||| | || || | Sbjct 1394192 CACCAGGGCGCTTGTTGCCACCCTGGTCGACATAGCGGGCAGTGTTGTTGTAAACACGGA 1394133 Query 154117 CCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGC 154176 |||||| ||| ||| | | || |||||||| ||| | | ||| ||| | Sbjct 1394132 GCATGGGAATCAGACCGTTCGATGTTCCGTTGGTTCCTCCGATATAGGAGCCAGTGGCAC 1394073 Query 154177 GCACTTGATGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCA-GTC 154234 | | | || ||||| | |||||| ||||| || || ||| || || ||||| ||| Sbjct 1394072 GAATGCGGTGGACGTTGAGGCCAATACCGCCAGCAGT-CTTGGAGATCAACGCGCATGTC 1394014 Query 154235 GCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGA 154294 || || |||||| || || ||||| || || | | ||| | ||| || || Sbjct 1394013 -TTGAGTGTGTCGTAGATACCCTCAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGA 1393955 Query 154295 ACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAG 154354 |||| || || | || || || ||||| || || |||||| || || Sbjct 1393954 TGACATCTGTGGGGACGGTGTACCAGCGTTGAAGAGCGTCGGCGACGCGTGTGTGAAGTA 1393895 Query 154355 TTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCC 154414 || || ||| | ||| || ||||| || | ||||| || || ||| ||||| Sbjct 1393894 CTTCTGCGACATGTAGTCGTATGTCTCGATAGCCTTCTCGATGTCCTCCATGTGGATGCC 1393835 Query 154415 GAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 | ||||| ||||||||||||||||| || || ||||| || Sbjct 1393834 AACAGCGACACGCATGAGCATGTGCTGGGGGCGCTCGGCAAC 1393793 >seq1 Length=4966325 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || |||||| | || || |||| Sbjct 2851434 GACTCCTTCTGGATGTTGTAGTCCGAAAGTGTGCGGCCGTCCTCCAACTGCTTGCCGGCG 2851493 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| |||||||| ||||||||||| ||||| || ||||| ||| | || | |||| Sbjct 2851494 AAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTC-CTGAATCTTCGACTTTAC 2851552 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||| | |||||| ||||| | ||| | || || |||||||| || || Sbjct 2851553 GTTGTCGATCGTGTCCGACGACTCAACCTCCAGCGTGATAGTCTTGCCAGTCAGGGTCTT 2851612 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 2851613 GACGAAGATCTGCAT 2851627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260991855440