Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq19 93.3 4e-14 seq1 93.3 4e-14 >seq19 Length=853957 Score = 93.3 bits (102), Expect = 4e-14 Identities = 336/517 (65%), Gaps = 19/517 (4%) Strand=Plus/Minus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129 |||||| | || | ||||| || |||||| || | ||| || | ||| |||| Sbjct 676163 CCCTGCATCCGTAAGAAGGCTGACTGGGCCCTGCGATGGATTTCTGACAAGAACTCCACT 676104 Query 47130 CTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT 47189 | ||| | ||| | | ||||||||| ||| || || |||||||| || || Sbjct 676103 TTCGCCAACCGTCTCGTTGCTTTCGCCGCCGTTGAAGGTATCTTCTTCAGTGGTTCGTTC 676044 Query 47190 GCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAG 47249 ||| | || || | |||| | || | |||||||| ||||| || ||||||| Sbjct 676043 GCGTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTCACATTCTCCAACGAG 675984 Query 47250 CTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTG---TCTCTACTA-CAACAC 47305 || ||||| | ||||| ||| ||||||| ||||||| || ||||| || | | Sbjct 675983 CTCATCTCTCGTGACGAGGGCATGCACACAGACTTTGCTTGCCTTCTCTTCTCTCTGCTG 675924 Query 47306 TAGAGTCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTC 47363 | | || ||| || || || || |||| | | | |||| |||||| Sbjct 675923 AATAACCGCCCAAGCAAAGAGGCTGT------CG-CAGCTA--TCATCACCGAGGCCGTC 675873 Query 47364 GCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCG 47423 | || ||| |||||| | | || || || || | | | || |||||||| Sbjct 675872 ACAATCGAGCAGGAGTTCCTGTCTGACGCCCTCCCTTGTGCGCTGCTCGGCATGAACGCC 675813 Query 47424 GAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGT-- 47481 | | ||| | |||||||||| || ||||| || ||||| || ||| ||| | Sbjct 675812 GGCCTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGCCTACT-GTTG-GCTCTTGGCA 675755 Query 47482 ATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGG 47541 | |||||| ||| || | || || ||||| || ||| | ||||| ||||| | | Sbjct 675754 ACCCCAAGCACTACAACGCTACCAACCCCTTCGACTTCATGGAGAACATCTCGCTTGCTG 675695 Query 47542 GCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||||||||||| |||||||||||||| || || || Sbjct 675694 GCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACTA 675658 >seq1 Length=4966325 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| ||||| || || || ||||| || Sbjct 2851401 CCACCACGAAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 2851460 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || | ||| || || ||| |||| | |||||||| || ||||| Sbjct 2851461 AGTGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 2851520 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || ||| ||| | |||| |||| ||||||| ||| || Sbjct 2851521 ATACCCTCCTTGTCCTGAATCTTCGACTTTACGTTG-TCGATCGTGTCCGACGACTCAAC 2851579 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| ||||| || || || || |||||||| Sbjct 2851580 CTCCAGCGTGATAGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 2851627 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| || | || | || ||||| || ||||| ||||| || Sbjct 2851629 CCACCGCGCAGACGCAGAACGAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAG 2851688 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || ||| ||||||| |||||||| || || || Sbjct 2851689 AGTGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 2851748 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| || || ||||| |||| || | || || | |||||| Sbjct 2851749 ATGCCCTCCTTGTCTTGAATCTTGGACTTGACGTTG-TCAATAGTATCGGATGACTCGAC 2851807 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCA 127091 ||||| ||| | || |||||||||| Sbjct 2851808 TTCGAGGGTGATGGTCTTGCCGGTCA 2851833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499450766480