Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3 152 5e-32 seq1 87.8 2e-12 >seq3 Length=2655511 Score = 152 bits (168), Expect = 5e-32 Identities = 411/621 (66%), Gaps = 11/621 (2%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCAC--GGAC 122955 ||||| ||||| || || || ||||||||||| |||||| | ||| | ||| ||| Sbjct 1393790 AAGGTTGCCGAGCGCCCCCAGCACATGCTCATGCGTGTCGCTGTTGGCATCCACATGGA- 1393848 Query 122956 GCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACG 123015 |||||||| || || | ||| || ||||| | ||||| || || | ||||| |||| Sbjct 1393849 -GGACATCGAGAAGGCTATCGAGACATACGACTACATGTCGCAGAAGTACTTCACACACG 1393907 Query 123016 CGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGC 123075 || || || | ||| ||| || || || || ||| |||| || || || | Sbjct 1393908 CGTCGCCGACGCTCTTCAACGCTGGTACACCGTCCCCACAGATGTCATCCTGCTTCCTCA 1393967 Query 123076 TCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGA-TTGCGCGTTG 123134 || | || ||||||||||| |||||||| || || | | || ||||||||| Sbjct 1393968 TCGACATGAAGGAAGACAGCATTGAGGGTATCTACGACACACT-CAAGACATGCGCGTTG 1394026 Query 123135 ATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGC 123194 || ||||| || ||||| || ||| | ||||| ||| | | | | | || | Sbjct 1394027 ATCTCCAAGACTGCTGGCGGTATTGGCCTCAACGTCCACCGCATTCGTGCCACTGGCTCC 1394086 Query 123195 CGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAAT-CCATGCTGCGAGTTTACAA 123253 ||| || | ||| |||||| | ||| || || | ||||||| || |||||||| Sbjct 1394087 TATATCGGAGGAACCAACGGAACATCGAACGGTCT-GATTCCCATGCTCCGTGTTTACAA 1394145 Query 123254 TAACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTA 123310 ||| | | || | ||||||||||| || ||| ||| || || | || ||||| Sbjct 1394146 CAACACTGCCCGCTATGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCATTTGCCATCTA 1394205 Query 123311 TCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGC 123370 || || |||||||||| ||| || | || || | | | | ||| || Sbjct 1394206 CCTCGAGCCGTGGCACGCTGACGTCTTCGGCTTCCTCGACCTGAGGAAGAACCACGGCAA 1394265 Query 123371 GGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCG 123430 ||| || || |||||| | || |||||| | ||| | |||||| | ||||||| Sbjct 1394266 GGAGGAGGTTCGTGCTCGCGATCTCTTCTACGCTCTGTGGATTCCCGATCTCTTTATGCA 1394325 Query 123431 ACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAG 123490 || || | || |||||| |||| | |||||||| ||| | ||| |||||| | Sbjct 1394326 GCGTGTCCAGGAGAACGGCGAGTGGACTCTCATGTGCCCCAACGAGTGCCCCGGCCTCGC 1394385 Query 123491 CGACGTTTACGGCAATCAGTT 123511 |||||||||||| || |||| Sbjct 1394386 TGACGTTTACGGCGATGAGTT 1394406 >seq1 Length=4966325 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | || || || ||||| || || ||||| || || || || || Sbjct 2851626 ATACCACCGCGCAGACGCAGAACGAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCA 2851685 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| || | || || || ||| | ||||| || |||||||| || Sbjct 2851686 GAGAGTGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGG 2851745 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || |||||||| || |||| || | || | || ||||| ||||| Sbjct 2851746 GGAATGCCCTCCTTGTCTTGAATCTTGGACTTGA-CGTTGTCAATAGTATCGGATGACTC 2851804 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||||||||| || | || |||||||| Sbjct 2851805 GACTTCGAGGGTGATGGTCTTGCCGGT 2851831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001917440920