Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 185 1e-41 seq19 114 2e-20 >seq3 Length=2655511 Score = 185 bits (204), Expect = 1e-41 Identities = 1107/1752 (63%), Gaps = 41/1752 (2%) Strand=Plus/Minus Query 115549 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 115608 ||| | | ||||||||||||||| || |||||||| || ||||||| || | ||| Sbjct 1395537 GCCATGGTTCGGAGGTAGTACATTCCGGTCTTGAGGCCAAGCTTCCATCCAGCGAAGTGC 1395478 Query 115609 ATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 115668 || || | | |||| | || || | |||| || ||||| | || || ||| Sbjct 1395477 ATGGATGTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTCAGAGACTGAGACTGA 1395418 Query 115669 TCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCAC 115728 ||||||||| || || || || ||||| | || | | | ||||||||| Sbjct 1395417 TCGATGAAGGCACCACGGTCAGCAGCCATCTGGATGATGGTACGCTGCGAGATTTCCCAG 1395358 Query 115729 ACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCA 115788 ||||| ||||||| ||| || || || || || | ||| ||||| || ||| Sbjct 1395357 ACAGTCTTGTAGAGAACCTTGATCTCGTCAGGAATGTTAGGGATGCGCTGGATGGATCCA 1395298 Query 115789 CCTGCCTTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGA 115845 || || | | |||| | | |||||| | || | ||||||||| || | || Sbjct 1395297 CC---CTCGGCAATGATGCGGTTCTTCATGTTCTCGGTCCAGAGACCCATGTCGACAAGG 1395241 Query 115846 TCCT----CCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAG 115901 |||| | || | | | |||||||| ||||| || ||||| || | || Sbjct 1395240 TCCTTGAGCAACCAAGGG----TTGACAACCTGGAACTCTCCAGCGAGCACACGACG-AG 1395186 Query 115902 A-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGG 115960 | || ||||| | ||||| ||||| |||||||| ||||| || | || || | || | Sbjct 1395185 AGTAAATGTTCGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTAG 1395126 Query 115961 AGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTT 116020 ||||||| ||||| || || | ||| || ||||||| ||| | ||| | Sbjct 1395125 AGGCTGTAGGCATAGGCGCAACGAGCAGAGAATTGCGGACACCGTACTGTGCAATCTTCT 1395066 Query 116021 CCTTGAGGGCGTCCCAGTCGTAGTTG--AGCTTTGTCTCCCCCTCCCACATATCAAACTG 116078 |||| || | | ||||||| || | || | || | | | ||||||| || |||| Sbjct 1395065 CCTTCAGCGAGGCCCAGTCCCAGAGGTCAG-TGGGTGTGACGC-CCCACATGTCGTACTG 1395008 Query 116079 GAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC-- 116136 || || || || | || || ||||| | || ||| ||||| || |||| Sbjct 1395007 AAGCTGGCCCTGCGAGACAGGGGAGCCCTCGTACGTAGTATAGGGGCC---AAACTCCTT 1394951 Query 116137 -GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATT 116195 ||| ||| | | | ||| ||||| || || ||||| || || | | || Sbjct 1394950 AGCCGTCTCGCAAGAAGAGGTCAAGGCGGCGTGGTAGATAGTCTCGAAGATCTGGGTGTT 1394891 Query 116196 CATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAG 116255 | | ||| ||||| || || || | || || | || | || || || Sbjct 1394890 GAGTTTCTTAGCCTCAGGCGACTCGAAGGGCAGGCGAAGAGCGAGGAAAGCGTCAGCAAG 1394831 Query 116256 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCAC 116315 ||| |||||||| || ||||| || | || | | || || || ||| || Sbjct 1394830 ACCCTGGACACCAAGACCAATAGGCCTGTGACGGAAGTTGCTGCGGCGTGCCTCCTCAAC 1394771 Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375 || || ||| ||||| | | | || || || ||| |||| || || Sbjct 1394770 TGGGTAGTGATTGACCTCGATGATCTTGTTGAGGTTGCGTGTGCAGACCTGGACGACCTC 1394711 Query 116376 ATGAAGCTTTTCGTAATCAAAA-CTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGA 116434 |||||||| | | |||| || || || | || | || ||| | ||||| |||| Sbjct 1394710 GTGAAGCTTCTTGAAATCGAACTCTCCGCG-CTTGTAATCGACGAAAGAGGGAAGAGCGA 1394652 Query 116435 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTAC 116494 || ||||| || || |||| | ||||||| ||||||| || || || || || | Sbjct 1394651 CGGAAGCCAGGTTGCAGACAGCGACCTCATCCGGTGCAGTGTATTCGATGATCTCAGTGC 1394592 Query 116495 ACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 116554 | | || || || ||||| || | |||||| || || ||| |||| |||| Sbjct 1394591 AGAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCAT 1394532 Query 116555 CCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA 116614 ||||||||||||| | || | || ||||| || || | || ||||| || | ||| | Sbjct 1394531 CCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATGGCGTACCAGA 1394472 Query 116615 -CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGG 116673 | || | | || ||||| | | || || ||||||||| ||| ||| Sbjct 1394471 GCTTCTGAGCACGG-ACAGTCTCACGACCCTTACCAAGCTTCTCGTACTTCTCGTAAAGG 1394413 Query 116674 GCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGA 116733 || | ||||| || || | | || | ||| || || || | || || | |||| Sbjct 1394412 GCAACGAACTCATCGCCGTAAACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGA 1394353 Query 116734 GACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAG 116793 | ||| | || ||||| || |||| ||| ||||| || || ||||| || || || Sbjct 1394352 GTCCACTCGCCGTTCTCCTGGACACGCTGCATAAAGAGATCGGGAATCCACAGAGCGTAG 1394293 Query 116794 AAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 116853 |||||||| ||| ||| | || || | || || || | || || | ||| | Sbjct 1394292 AAGAGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCCG 1394233 Query 116854 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACGA---CCA 116910 | || || ||||||||||| || ||||| | || | || || ||| ||| Sbjct 1394232 AAGACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAATGCACCAGGGCGCTTGTTGCCA 1394173 Query 116911 GCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCA 116970 |||||| ||||| | || || ||| | || || ||||| ||||| | ||| | Sbjct 1394172 CCCTGGTCGACATAGCGGGCAGTGTTGTTGTAAACACGGAGCATGGGAATCAGACCGTTC 1394113 Query 116971 GATTGGCCATTTGTCCC-CCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCA 117028 ||| || || || || |||| ||| ||| | |||| | | ||||| || | Sbjct 1394112 GATGTTCCGTTGGTTCCTCCGATATAGGAGCCAG--TGGCACGAATGCGGTGGACGTTGA 1394055 Query 117029 TACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCC 117088 |||||||| || || ||| ||||| ||||| | |||| || ||||||| | Sbjct 1394054 GGCCAATACCGCCAGCAGTCTTGGAGATCAACGCGCATGTCTTGAGTGTGTCGTAGATAC 1393995 Query 117089 CATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTG 117148 | || || ||| |||| | |||||||||||||| ||||| ||||| |||| Sbjct 1393994 CCTCAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGTGGGGACGGTG 1393935 Query 117149 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCG 117207 |||||||||||||||| || || | |||||| |||| ||| | || ||||| | ||| Sbjct 1393934 TACCAGCGTTGAAGAGCGTCGGCGACGCGTGTGTGAA-GTACTTCTGCGACATGTAGTCG 1393876 Query 117208 TAGGTCTCCA-AGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAA 117266 || ||||| | || | | ||||| ||| ||| || || | | ||| ||||| | Sbjct 1393875 TATGTCTCGATAGCCTTCTCG-ATGTCCTCCATGTGGATGCCAACAGCGACACGCATGAG 1393817 Query 117267 CATGTATTGGGG 117278 ||||| ||||| Sbjct 1393816 CATGTGCTGGGG 1393805 >seq19 Length=853957 Score = 114 bits (126), Expect = 2e-20 Identities = 296/450 (66%), Gaps = 6/450 (1%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| || || ||||||||||||||||| ||||| ||| | || ||| |||||||| Sbjct 675657 GTAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGCGAGATGTTCTCCAT 675716 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 127350 || || || ||||| | | ||| | | || |||| || || || Sbjct 675717 GAAGTCGAAGGGGTTGGTAGCGTTGTAGTGCTTGGGGTTGCCAAGAGCCAACAGTAGGCG 675776 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 127410 ||| | |||| |||| ||||||| |||| | | |||||| |||| || ||| Sbjct 675777 ATCAGCGACGAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAGCAGCGCACA 675836 Query 127411 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTG 127470 ||||| ||||| | | |||| ||| ||| || || || || | ||| || Sbjct 675837 AGGGAGGGCGTCAGACAGGAACTCCTGCTCGATTGTGACGGCCTCGGTGATGATAGCTGC 675896 Query 127471 AATAGTGTCCACCCCAGGTC---TATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAACTC 127527 | || || | || | |||| | | || |||||| |||||| || Sbjct 675897 GACAGCCTCTTTGCTTGGGCGGTTATTCAGCAGAGA---GAAGAGAAGGCAAGCAAAGTC 675953 Query 127528 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 127587 | ||| | ||||||||||| |||||||| || || ||||| ||||| |||||||| Sbjct 675954 TGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTGAGACCGGGCATGAG 676013 Query 127588 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||||||| |||||| || | || || ||| ||||||||| || || || Sbjct 676014 ACCACGCTTCTTCAGCCAGAAGATGGACGCGAACGAACCACTGAAGAAGATACCTTCAAC 676073 Query 127648 ACACGCGAACGCAAATAGACGCTCGGCAAA 127677 ||||| |||| ||||| | ||| || Sbjct 676074 GGCGGCGAAAGCAACGAGACGGTTGGCGAA 676103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505459173320