Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3 174 2e-38 seq19 158 2e-33 >seq3 Length=2655511 Score = 174 bits (192), Expect = 2e-38 Identities = 450/678 (66%), Gaps = 6/678 (1%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCAC-GGCAGGCCTGCTTCTCAGATAGTACATGC 203897 || ||| || |||||||| |||| | || ||||| | || ||| || |||||||| | Sbjct 1395571 CTGGTCGACAGTGAACTGGATGG-GCGCAGAGGCAGCCATGGTTCGGAGGTAGTACATTC 1395513 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 ||||||| ||||| || ||| || | ||||||||| | | |||| || | | Sbjct 1395512 CGGTCTTGAGGCCAAGCTTCCATCCAGCGAAGTGCATGGATGTGATCTTGCCCATAGTAG 1395453 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCG 204016 | || |||||| |||||||||||||| || |||||||| ||| || || || || Sbjct 1395452 GCTCCTTCATGTGGATGTTCAGAGACTGAGACTGATCGATGAA-GGCACCACGGTCAGCA 1395394 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG 204076 ||||| | ||| ||||| |||||| || ||||| || |||||| | | | || | Sbjct 1395393 GCCATCTGGATGATGGTACGCTGCGAGATTTCCCAGACAGTCTTGTAGAGAACCTTGATC 1395334 Query 204077 TGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135 | | ||| | | | | | ||| || || || ||||| || | | || | Sbjct 1395333 TCGTCAGGAATGT-TAGGGATGCGCTGGATGGATCCACCCTCGGCAATGATGCGGTTCTT 1395275 Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 | | | ||| ||| | |||| || || ||| | || ||||||| | Sbjct 1395274 CATGTTCTCGGTCCAGAGACCCATGTCGACAAGGTCCTTGAGCAACCAAGGGTTGACAAC 1395215 Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || ||||| | ||||| | || | | | | ||| |||| | || ||||| Sbjct 1395214 CTGGAACTCTCCAGCGAGCACACGACGAGAGTAAATGTTCGAGGTGTAGGGCTCGAAGCA 1395155 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||||||| | |||||| | ||| ||| || ||||| || || | |||||| || Sbjct 1395154 CTCGTTGTTGCCAAGAATCTGCGAGGTAGAGGCTGTAGGCATAGGCGCAACGAGCAGAGA 1395095 Query 204316 GTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375 ||||| |||||||| | | | | | |||||| |||| |||||| | || | Sbjct 1395094 ATTGCGGACACCGTACTGTGCAATCTTCTCCTTCAGCGAGGCCCAGTCCCAGAGGTCAGT 1395035 Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTA 204435 |||| | ||||||||||||||| |||||| ||| || ||| ||| ||||| ||| Sbjct 1395034 GGGTGTGACGCCCCACATGTCGTACTGAAGCTGGCCCTGCGAGACAGGGGAGCCCTCGTA 1394975 Query 204436 CGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTA 204495 ||| | ||| || | ||| | ||| || ||| || | || || |||| | ||| Sbjct 1394974 CGTAGTATAGGGGCCAAACTCCTTAGCCGTCTCGCAAGAAGAGGTCAAGGCGGCGTGGTA 1394915 Query 204496 CATGGTCTCAAAGATCTG 204513 || ||||| |||||||| Sbjct 1394914 GATAGTCTCGAAGATCTG 1394897 Score = 123 bits (136), Expect = 4e-23 Identities = 366/549 (67%), Gaps = 14/549 (3%) Strand=Plus/Minus Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119 |||||| || ||| || || || || ||| ||||| ||||| || || || || Sbjct 1394431 CTCGTACTTCTCGTAAAGGGCAACGAACTCATCGCCGTAAACGTCAGCGAGGCCGGGGCA 1394372 Query 205120 TTTTTTGGGACACATCAGAGACCACAT-CTGATCGTCTTTCACCCTCTCCATAAACAGGT 205178 | ||||| ||||| |||| |||| | | || || | || | || |||||| || | Sbjct 1394371 CTCGTTGGGGCACATGAGAGTCCACTCGCCGTTC-TCCTGGACACGCTGCATAAAGAGAT 1394313 Query 205179 CGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCT 205238 || |||||||| |||| || ||||| || || | || | || | || |||||| Sbjct 1394312 CGGGAATCCACAGAGCGTAGAAGAGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCT 1394253 Query 205239 TTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATT 205297 | ||| ||| || |||||| | | ||| |||||||||||||| | | | ||| | | Sbjct 1394252 TCCTCAGGTCGAGG-AAGCCGAAGACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAAT 1394194 Query 205298 GCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGC 205357 || || || | |||||| ||||||||||| || ||| | | |||| |||| || Sbjct 1394193 GCACCAGGGCGCTTGTTGCCACCCTGGTCGACATAGCGGGCAGTGTTGTTGTAAACACGG 1394134 Query 205358 AGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCC 205417 ||||| || | ||||||||| | || ||||| || | ||| ||||| || Sbjct 1394133 AGCATGGGAATCAGACCGTTCGATGTTCCGTTGGTTCCTCCGATATAGGAGCCAGTGGCA 1394074 Query 205418 CTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA-C 205474 | | || |||| | | |||||| ||||||| | ||||| |||| ||||| Sbjct 1394073 CGAATGCGGTGGACGTTG--AGGCCAATACCGCCAGCAGTCTTGGAGATCAACGCGCATG 1394016 Query 205475 TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAGCA 205533 ||||| || ||| |||||| || | ||| || ||| || |||| | || |||| Sbjct 1394015 TCTTG-AGTGTGTCGTAGATACCCTCAATGCTGTCTTCCTTCA-TGTCGATGAGGAAGCA 1393958 Query 205534 CGAAGCCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGA 205592 || | || || ||| | | | || || |||| ||||||||| || ||||| ||| Sbjct 1393957 GGATGACATCTGTGGGGACGGT-GTACCAGCGTTGAAGAGCGTCGGCGACGCGTGTGTGA 1393899 Query 205593 AGCGCTTCT 205601 || ||||| Sbjct 1393898 AGTACTTCT 1393890 >seq19 Length=853957 Score = 158 bits (174), Expect = 2e-33 Identities = 335/499 (67%), Gaps = 11/499 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||| | | || || |||||||| |||| ||||| Sbjct 675672 CTTCTCGAAGAAGTTGGTCTTGCCAGCAAGCGAGATGTTCTCCATGAAGTCGAAGGGGTT 675731 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| ||| |||| || || |||||| ||| | | || || || || || Sbjct 675732 GGTAGCGTTGTAGTGCTTGGGGTTGCCAAGAGCCAACAGTAGGCGATCAGCGACGAACTC 675791 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| | | ||| || || |||||| | ||||| || || || Sbjct 675792 GATGTACTGGCACATGAGGCCGGCGTTCATGCCGAGCAGCGCACAAGGGAGGGCGTCAGA 675851 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAAT--CTGCGAGA--CACGTTCGT 159884 ||| ||||||| ||| || ||| || ||||| | || |||||| | | | || | Sbjct 675852 CAGGAACTCCTGCTCGATTGTGACGGCCTCGGTGATGATAGCTGCGACAGCCTCTTTGCT 675911 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 ||| | | | | | || || ||||| |||||||| ||||| | Sbjct 675912 TGGGCGGTTATTCAGCAGAGAG-------AAGAGAAGGCAAGCAAAGTCTGTGTGCATGC 675964 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| |||||||||| ||||||||| | |||| || ||||||| |||||| | Sbjct 675965 CCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTGAGACCGGGCATGAGACCACGCTTCT 676024 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACG 160064 | ||||| || |||| ||| || | ||| || || ||||| || || ||||| || || | Sbjct 676025 TCAGCCAGAAGATGGACGCGAACGAACCACTGAAGAAGATACCTTCAACGGCGGCGAAAG 676084 Query 160065 CCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAG 160124 | ||||| | | | |||| || ||| ||||| |||| | |||||| |||| Sbjct 676085 CAACGAGACGGTTGGCGAAAGTGGAGTTCTTGTCAGAAATCCATCGCAGGGCCCAGTCAG 676144 Query 160125 CCTTCTTTGCGATGCACGG 160143 ||||||| |||||| || Sbjct 676145 CCTTCTTACGGATGCAGGG 676163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795152943747120