Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 138 1e-27 seq2 120 3e-22 seq4 95.1 1e-14 >seq1 Length=4966325 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||| ||||| ||||| ||||| || |||||| |||| || Sbjct 2851191 ACCAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGCCCGTCTTCC 2851250 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || || | ||||||||||| | || | | |||||| ||| | Sbjct 2851251 AGCTGCTTACCCGCAAAGATAAGACGCTGCTGGTCAGGTGGGATACCCTCCTTATCCTGG 2851310 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | | | ||||||||| || || || |||| |||||||| || Sbjct 2851311 ATCTTAGACTTGA-CGTTGTCGATCGTGTCGCTAGACTCAACCTCCAATGTGATGGTCTT 2851369 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || || ||||||||||| Sbjct 2851370 GCCGGTGAGTGTCTTGACGAAGATTTGCAT 2851399 Score = 129 bits (142), Expect = 7e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| || | ||||||||||||||| Sbjct 2851436 CTCCTTCTGGATGTTGTAGTCCGAAAGTGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAA 2851495 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||||||| |||||| ||| | ||| Sbjct 2851496 GATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGAATCTTCGACTTTA-CGT 2851554 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||| || || |||| |||||| || ||||| ||||| || || | Sbjct 2851555 TGTCGATCGTGTCCGACGACTCAACCTCCAGCGTGATAGTCTTGCCAGTCAGGGTCTTGA 2851614 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 2851615 CGAAGATCTGCAT 2851627 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| || || |||| ||| |||||| || || |||||||| || || || || | Sbjct 2851640 ACGCAGAACGAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGTGTACGGCC 2851699 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||||||||| ||||||||||||||||| | || | || |||||| Sbjct 2851700 ATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTT 2851759 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||| ||||| ||||| ||| | | | || ||| || || || || | |||| Sbjct 2851760 GTCTTGAATCTTGGACTTGA-CGTTGTCAATAGTATCGGATGACTCGACTTCGAGGGTGA 2851818 Query 46557 TGGTTTTGCCCGTCA 46571 |||| ||||| |||| Sbjct 2851819 TGGTCTTGCCGGTCA 2851833 Score = 111 bits (122), Expect = 2e-19 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||||||||| || | || || ||||||||||| ||||| Sbjct 2851947 CTCCTTCTGGATGTTGTAATCGGATAGAGTACGTCCATCCTCAAGCTGCTTGCCAGCGAA 2852006 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 ||||||||||||||||| | || | || ||||||||| |||||| |||||| Sbjct 2852007 GATCAAGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGCTCTTGA 2852062 >seq2 Length=3786261 Score = 120 bits (132), Expect = 3e-22 Identities = 96/116 (83%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || |||| |||||||||||||||||||| Sbjct 2400699 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2400640 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 |||| |||||||||||| | || | || |||||||||| |||||| ||||| Sbjct 2400639 GATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA 2400584 >seq4 Length=1737036 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| ||||| ||||||||||| |||||||| | || || Sbjct 1018853 CACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTC 1018794 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 ||||||||||| ||||| || | ||||||||||| | || | || ||||||||| Sbjct 1018793 AAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 1018737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236796136040