Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq19 176 5e-39 seq1 116 4e-21 seq4 104 2e-17 seq2 98.7 1e-15 >seq19 Length=853957 Score = 176 bits (194), Expect = 5e-39 Identities = 205/276 (74%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||||||| || || | || | ||| ||||||||||| ||| || || Sbjct 676265 GTAGGTGTCGATGAGGAGAGAGTATGTCTCAGCGTGGACGTTCTCCATCATGATCTGGAA 676324 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| || ||||| | ||| || || | ||| |||||||| || || Sbjct 676325 GCCGTAGAAGCATCGTGCCTCAGGGATCTGTACCTCGCTCGAGAAGCGCTCGACAAGGTT 676384 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| ||||| ||| ||| ||||| ||||| || ||||| |||||| || Sbjct 676385 CTCGTTGACAATGCCATCGGAGGCAGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAACG 676444 Query 133347 CTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| |||||| | |||| | ||||||| | |||||||||| || || | ||| || Sbjct 676445 CTCGTCGTCGTTGAGGCGCTTGTTCCAGTCGTGGATGTCCTTGGAGAGATCGATCTCTTC 676504 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||| || || |||||||| || |||||||| Sbjct 676505 TGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 676540 Score = 132 bits (146), Expect = 5e-26 Identities = 317/477 (66%), Gaps = 2/477 (0%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | || ||| | ||| || || ||||||||| Sbjct 675673 TTCTCGAAGAAGTTGGTCTTGCCAGCAAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTG 675732 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744 | | |||||||||||||| | | || | | || || | || || ||||||||| Sbjct 675733 GTAGCGTTGTAGTGCTTGGGGTTGCCAAGAGCCAACAGTAGGCGATCAGCGACGAACTCG 675792 Query 132745 ATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC-GGCAGCGCTTCGGT 132803 ||||| || ||||| || || | || ||||| ||||| || || || || | Sbjct 675793 ATGTACTGGCACATGAGGCCGGCGTTCATGCCGAGCAG-CGCACAAGGGAGGGCGTCAGA 675851 Query 132804 GAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT 132863 || || |||||||| | ||| || ||||||| ||| | || | | ||| Sbjct 675852 CAGGAACTCCTGCTCGATTGTGACGGCCTCGGTGATGATAGCTGCGACAGCCTCTTTGCT 675911 Query 132864 CGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTC 132923 || || | || | ||| | | |||||||||||| |||| ||||||||| Sbjct 675912 TGGGCGGTTATTCAGCAGAGAGAAGAGAAGGCAAGCAAAGTCTGTGTGCATGCCCTCGTC 675971 Query 132924 CCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCA 132983 | || ||||| |||||| ||| || | ||||||||||| || || || || ||||| Sbjct 675972 ACGAGAGATGAGCTCGTTGGAGAATGTGAGACCGGGCATGAGACCACGCTTCTTCAGCCA 676031 Query 132984 AAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAG 133043 || |||| ||||| || ||||||| || || ||||| |||||||| || || Sbjct 676032 GAAGATGGACGCGAACGAACCACTGAAGAAGATACCTTCAACGGCGGCGAAAGCAACGAG 676091 Query 133044 GCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 || | | |||| |||| | ||| | ||||| ||||| ||||| || ||||| Sbjct 676092 ACGGTTGGCGAAAGTGGAGTTCTTGTCAGAAATCCATCGCAGGGCCCAGTCAGCCTT 676148 >seq1 Length=4966325 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| |||||||| | || || ||| | | | Sbjct 2851399 ATGCAAATCTTCGTCAAGACACTCACCGGCAAGACCATCACATTGGAGGTTGAGTCTAGC 2851340 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || |||| || || ||||| || || | ||||| Sbjct 2851339 GACACGATCGACAACG-TCAAGTCTAAGATCCAGGATAAGGAGGGTATCCCACCTGACCA 2851281 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||||| || |||||||| |||| |||||| || ||| ||||| Sbjct 2851280 GCAGCGTCTTATCTTTGCGGGTAAGCAGCTGGAAGACGGGCGCACGCTTTCCGATTACAA 2851221 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| || || |||| || ||| || | || || Sbjct 2851220 CATCCAGAAGGAGTCGACACTTCACCTGGTTCTTCGTCTGCGTGGTGG 2851173 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| || ||||| | || || ||| | | Sbjct 2851627 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACTATCACGCTGGAGGTTGAGTCGTCG 2851568 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | | | ||||| || || | ||||| ||||| || || | ||||| Sbjct 2851567 GACA-CGATCGACAACGTAAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCA 2851509 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| ||||| ||| |||| |||| ||||| || |||||||| Sbjct 2851508 GCAGCGTCTCATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACACTTTCGGACTACAA 2851449 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| ||||||| || |||||||| ||| Sbjct 2851448 CATCCAGAAGGAGTCGACGCTCCACTTGGTGCTCCGT 2851412 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| ||||||||| |||| |||||| | |||| | | | |||| | || Sbjct 2851831 ACCGGCAAGACCATCACCCTCGAAGTCGAGTCATCCGATACTATTGACAACG-TCAAGTC 2851773 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || || | ||||| ||||| |||||| | ||||| ||||| | || | ||| ||||| Sbjct 2851772 CAAGATTCAAGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAA 2851713 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||| || || | || || ||| ||||||||||| || ||||| | || ||||| Sbjct 2851712 GCAGCTTGAGGATGGCCGTACACTCTCTGACTACAACATTCAGAAGGAGTCCACACTGCA 2851653 Query 38447 TTTGGTGCTGCGTTTGAGAGGCGG 38470 | || |||||| || | || || Sbjct 2851652 CCTCGTTCTGCGTCTGCGCGGTGG 2851629 >seq4 Length=1737036 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| | ||||| ||||| ||||| | ||| ||||| ||||| || Sbjct 1018737 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAG 1018796 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | ||||| ||| ||||||||||||||| ||||| |||| || || ||||||| Sbjct 1018797 GATGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTCCACCTGGTGCTC 1018856 Query 38457 CG 38458 || Sbjct 1018857 CG 1018858 >seq2 Length=3786261 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| |||||| | ||||| ||||| || || | ||| ||||| Sbjct 2400592 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 2400651 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| || || || ||||||||||||||| ||||| |||| || || Sbjct 2400652 CAGCTCGAGGACGGCCGTACTCTTTCCGACTACAACATCCAGAAGGAGTCGACTCTTCAC 2400711 Query 38448 TTGGTGCTGCGT 38459 ||||| || ||| Sbjct 2400712 TTGGTCCTCCGT 2400723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171380759680