Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1 264 1e-65 seq3 96.9 4e-15 seq11 86.0 8e-12 >seq1 Length=4966325 Score = 264 bits (292), Expect = 1e-65 Identities = 477/695 (69%), Gaps = 12/695 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||||||||||||||| ||||| || ||||| | ||||| ||||||||||| Sbjct 2691380 TCGAAGTCTTCACCACCCAAGTGAGTATCACCGGCGGTGGACTTGACCTCAAAGATACCC 2691321 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||| ||| | || | |||||||| || |||||||| |||| ||| || ||||| ||| Sbjct 2691320 TCTTCGATGGTCAAGAGGGAAACATCGAATGTACCACCTCCCAAGTCGAAGATGAGGACG 2691261 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | || | ||||| || |||||||| || ||||| || || || || || Sbjct 2691260 TTGCGCTCACCCTCGGTCTTCTTGTCAAGACCGTAGGCAATAGCAGCAGCAGTGGGCTCG 2691201 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| ||||| ||||| | ||||| || || || || ||| Sbjct 2691200 TTGATGATACGGAGGACGTTAAGGCCGGCAATGAGACCAGCATCCTTAGTAGCCTGACGT 2691141 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 ||||| ||||| |||||||| || || || ||||| |||| |||| | ||| || Sbjct 2691140 TGCGAGTCGTTGAAGTAGGCAGGAACTGTGACGACGGCGTTGTTGACGGTTCCACCCAGG 2691081 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || || | || |||| ||| || | ||| || || ||||| || | | Sbjct 2691080 TAGGACTCAGCAGTCTCCCTCATCTTGACGAGGATCATGGAAGAGATCTCCTCGGGTGTG 2691021 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC---G 7873 || ||| ||||| || || || || | | | || || || |||| | Sbjct 2691020 AAGGTCTTCTCCTCACCCTTGAACTCGACCTGGACGACAGGCTT----GC--CACCCTTG 2690967 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 || ||||| | | | | ||||||||| | ||||||| ||| ||||| Sbjct 2690966 TCAATGACCTTGAAGGGGAAGTGCTTCATATCGGCCTGGACCTCGGCGTCGTTGAACTTG 2690907 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 | ||||| || ||||| || || || |||||||| | ||||||||||| |||||| Sbjct 2690906 CGACCGATGAGGCGCTTGGCGTCGAAGACTGTGTTGATAGGGTTCATGGCGACCTGGTTC 2690847 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 || || | ||| || || ||||| || | || || || || ||| | || || || Sbjct 2690846 TTTGCGGAGTCGCCAATGAGACGCTC---GGTGTCGGTGAAGGCAACGAAGGACGGTGTT 2690790 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACG 8113 || | || || |||||||| || ||||| || | |||||| | ||| ||| ||| Sbjct 2690789 GTCCTGTTACCCTGGTCGTTTGCGATAATCTCAATGCGGTCATCCCTGAAGATGCCTACG 2690730 Query 8114 CACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || || || ||||| || | ||||||||| || || Sbjct 2690729 CAAGAGTAGGTTGTACCGAGATCAATACCAATGGC 2690695 Score = 145 bits (160), Expect = 1e-29 Identities = 496/770 (64%), Gaps = 21/770 (3%) Strand=Plus/Minus Query 6635 CCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTT 6694 ||||| ||||||||||| |||||| | || ||||| | | |||| || ||| Sbjct 2692260 CCCTTGTCATTCGTAATGACAATCTTGTTGGTCTTACCAGTGCCCTTCTCGAGAGCGGAG 2692201 Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC 6754 || |||| |||||| || |||||||||||||| | || | || || || ||| | Sbjct 2692200 ACGTTCATAATACCGTTGGCATCAACATCGAAGGTGACCTCGATCTGAGGAACACCACGG 2692141 Query 6755 GGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTC 6814 || || | ||| ||||| || | || || | || || | |||| ||| | | Sbjct 2692140 GGCGCAGGTGGGATACCAGTAAGCTCGAACTTGCCGAGCAGGTTGTTGTCCTTTGTGCGA 2692081 Query 6815 TTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTTGTGCCGTTG 6872 ||| ||||| || ||||| | || | ||||| || || || || || | Sbjct 2692080 GCACGCTCACCCTCGTAGACCTGGATGAGGACACCG--GGCTGGTTGTCGCTGAAGGTGG 2692023 Query 6873 AGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAA 6932 |||||| | ||||| | || || || || || | | || | | ||||| | Sbjct 2692022 AGAAGACCTCAGACTTCTTGGTGGGGATGGTAGTGTTGCGCTTGATGAGAGCAGTCATGA 2691963 Query 6933 TACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTC---CAAGAGTAACAGGT 6989 |||||| ||| |||| || ||||| || || | ||||| || ||| | | || Sbjct 2691962 CACCACCAGCAGTCTCGATACCGAGAGAGAGCGGCGAAACGTCGAGCAGGAGGATCTCGT 2691903 Query 6990 -------CTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCC 7042 |||| | ||| || |||| | | |||||| || ||||| | || Sbjct 2691902 TGGTAGACTTGGA-AGAAGTGT------CACCAGACAGGATGGCAGCCTGGACGGCGGCA 2691850 Query 7043 CCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAA 7102 ||||| || || |||||||||||||| || | || || | || || ||||| || | Sbjct 2691849 CCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTGGGCTCCTTGCCGTTGAAGAAG 2691790 Query 7103 TCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCA 7162 || || | ||| | || | || ||||| || || || ||||| || | ||||| || Sbjct 2691789 TCGGAGACCATCTTCTGGACCTTGGGGATACGGGTGGAACCACCAACGAGGACGATCTCG 2691730 Query 7163 TTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACAT 7222 | || || || |||||||| | ||| || || ||||| || ||||| Sbjct 2691729 TGGACGGAGGACTTGTCGATCTTGGCGTCACGGAGGACGCGCTCGACGGGCTCCATGGTG 2691670 Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 ||||| | |||| || || || || ||||| |||||||| || || |||||||| Sbjct 2691669 GAGCGGAAGAGGTCCTGGCAGAGCTCTTCGAAACGAGCACGGGTGATCGAGGTATAGAAG 2691610 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTT 7342 || | || ||||| | || ||||| || || | || || || | ||| || | || Sbjct 2691609 TCGATACCCTCGTACAGGGAGTCAATCTCGATAGAGGTCTGAGCAGACGAGGAAAGAGTG 2691550 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTT 7392 ||||| || ||||| || || || || | |||||| || ||||| | ||| Sbjct 2691549 CGCTTGGCACGCTCGCAAGCAGTGCGGAGACGACGGAGAGCACGAGCGTT 2691500 >seq3 Length=2655511 Score = 96.9 bits (106), Expect = 4e-15 Identities = 176/254 (69%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 105726 GACATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCC 105785 |||||| | || || ||| || || || | ||| ||||| | ||| | |||||||| Sbjct 1394164 GACATAGCGGGCAGTGTTGTTGTAAACACGGAGCATGGGAATCAGACCGTTCGATGTTCC 1394105 Query 105786 ATTTGTTCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACC 105845 || ||||| | |||| || | | ||||| | ||| |||| | |||||||| Sbjct 1394104 GTTGGTTCCTCCGATATAGGAGCCAGTGGCACGAATGCGGTGGACGTTGAGGCCAATACC 1394045 Query 105846 CCCAGCCCACTTACTGAT--ACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATA 105903 ||||| ||| ||| ||||||| |||| | ||| ||||| ||||| || || Sbjct 1394044 GCCAGCAGTCTTGGAGATCAACGCGCATG-TCTTG-AGTGTGTCGTAGATACCCTCAATG 1393987 Query 105904 CTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCA 105963 || |||||||| | | || ||||| || |||||||| ||||| ||||||||||| Sbjct 1393986 CTGTCTTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGTGGGGACGGTGTACCAGCG 1393927 Query 105964 TTGAACAGAGTTGG 105977 ||||| || || || Sbjct 1393926 TTGAAGAGCGTCGG 1393913 >seq11 Length=1108966 Score = 86.0 bits (94), Expect = 8e-12 Identities = 215/327 (66%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | ||| || || || ||| | ||||| || |||| ||| Sbjct 496533 TCGAAGTCCTCACCACCAAGGTGAGTGTCACCGTTGGTGGACTTGACCTCGAAGACACCG 496474 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || | | | || | ||| || ||||||||||| || || | | | ||| Sbjct 496473 TTCTGGATCTCGAGGACGGAGATATCGAATGTACCACCACCGAGATCGTAGACGGCGACG 496414 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || |||| || ||| || |||||||| || | || || || || || || Sbjct 496413 ------ACGGCGTCGGTGGCCTTGTCAAGACCGTAGGCAAGGGCGGCAGCGGTGGGCTCG 496360 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | | ||| || ||| || || ||||| | || || || || || || || Sbjct 496359 TTGACGACACGGAGGACGTTGAGACCGGCAATCTGACCGGCGTCCTTGGTGGCCTGACGC 496300 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||| ||||| || ||||| |||| | |||| ||||| || | Sbjct 496299 TGGGAGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTTCTTGACGTTCTTGCCCATG 496240 Query 7757 TACGATTCCGCGATATCTTTCATTTTG 7783 || | || ||| | || ||||| ||| Sbjct 496239 TAGGCCTCGGCGGTCTCCTTCATCTTG 496213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635130997810680