Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3 179 4e-40 seq1 127 2e-24 >seq3 Length=2655511 Score = 179 bits (198), Expect = 4e-40 Identities = 294/416 (71%), Gaps = 11/416 (3%) Strand=Plus/Plus Query 11588 TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG 11647 ||| |||||||||||| |||||||||| |||||||| || ||| ||||| |||||| Sbjct 1084110 TGTTGAAACCGTCCATCTCTGTGAGAATCTGGTTGAGTGTGGCTTCGCGCTCGTCGTTGC 1084169 Query 11648 -AGGGCATACCACCTGC--CGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATA 11704 | || | |||| ||||||| ||||| ||||| ||||| |||||||| | Sbjct 1084170 CACCGCCAAAGTTCTGCTTCGAACGCGAGCGACCGATGGCGTCGATCTCGTCGATGAAGA 1084229 Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764 |||||||||| | | || || | | || || || || || ||| ||| |||| Sbjct 1084230 TGATACACGGTGTGCTCTTGCGCGCGTTGGCAAACAGGTCTCGCACTCGCGACGCACCAA 1084289 Query 11765 CACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTAGA 11822 |||| ||||||||||| ||||| | | | || | ||||||| |||||| || ||| Sbjct 1084290 CACCGACGAACATCTCGACGAACTCGGAACCGCTCA-CACTGAA-GAAGGGCACGCCAGA 1084347 Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882 |||||||||| |||| || || || |||||||| ||||| || | |||| ||| | Sbjct 1084348 CTCACCAGCGGTGGCCTTGGCCAGCAGTGTCTTACCGGTACCTGGAGGTCCAGAGAGGAC 1084407 Query 11883 GGCGCCACGGGGGATCTTGGCACC--ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAG 11940 || || |||||||||||||| || |||| | |||| |||| | ||||||||| Sbjct 1084408 AGCACCGCGGGGGATCTTGGCCCCCAGCTTC--TGGAAGCGAGCAGGGTCCTTGAGGAAA 1084465 Query 11941 TCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATCGGTGAA 11996 |||| |||| | |||| |||||| ||| ||||| | || |||| ||| Sbjct 1084466 GATACAAACTCCATGATCTCCTGCTTGGCCTCGTCCATACCAGCTACGTCGGCGAA 1084521 Score = 163 bits (180), Expect = 3e-35 Identities = 1061/1686 (63%), Gaps = 43/1686 (3%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || ||||| || || ||||| ||| ||||||| | | ||||| || | | Sbjct 1395528 CGGAGGTAGTACATTCCGGTCTTGAGGCCAAGCTTCCATCCAGCGAAGTGCATGGATGTG 1395469 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 | ||| | || || || ||| | ||||| |||||||||||||||||||| Sbjct 1395468 ATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTCAGAGACTGAGACTGATCGATGAAG 1395409 Query 109528 CGACCACGATCAGCCGCCATGTCGATGA---TACACTTTTGGCTA-ATTTCCCAGACAGT 109583 |||||| ||||| ||||| | ||||| ||| || || | |||||||||||||| Sbjct 1395408 GCACCACGGTCAGCAGCCATCTGGATGATGGTACGCT----GCGAGATTTCCCAGACAGT 1395353 Query 109584 CTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGC 109643 |||||| | | |||||| || || ||||||| |||| || || || ||||| | Sbjct 1395352 CTTGTAGAGAACCTTGATCTCGTCAGGAATGTTAGGGATGCGCTGGATGGATCCACCCTC 1395293 Query 109644 CTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT---- 109699 | ||| | | |||||| | | | ||||||||| | | || || | Sbjct 1395292 GGCAATGATGCGGTTCTTCATGTTCTCGGTCCAGAGACCCATGTCGACAAGGTCCTTGAG 1395233 Query 109700 CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGT 109759 |||| | | | |||||| || || || ||||| || || || ||| |||| Sbjct 1395232 CAACCA-AGG---GTTGACAACCTGGAACTCTCCAGCGAGCACACGACGAGAGTAAATGT 1395177 Query 109760 TAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGG 109819 | | |||||||| ||||| ||||| |||||||| || || || | || || ||||| | Sbjct 1395176 TCGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTAGAGGCTGTAG 1395117 Query 109820 GCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTG 109879 |||| || || | ||| ||| || |||| ||| | | | | ||| || | Sbjct 1395116 GCATAGGCGCAACGAGCAGAGAATTGCGGACACCGTACTGTGCAATCTTCTCCTTCAGCG 1395057 Query 109880 CGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTA 109939 | |||| || | | | | | || | | | ||||||| || ||||| Sbjct 1395056 AGGCCCAGTCCCAGAGGTC-----AGTGGGTGTGA-CGCCCCACATGTCGTACTGAAGCT 1395003 Query 109940 CACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACT 109999 |||| | |||| || |||| | | | || | || ||| ||| || Sbjct 1395002 GGCCCTGCGAGACAGGGGAGCCCTCGTACGTAGTATAGGGGCCAAACTCCTTAGCCGTCT 1394943 Query 110000 CGGATGAAG-CCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGG 110058 || | |||| || || || || || || |||||||| || || || | || | Sbjct 1394942 CGCAAGAAGAGGTCAAG-GCGGCGTGGTAGATAGTCTCGAAGATCTGGGTGTTGAGTTTC 1394884 Query 110059 CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGA 110118 || ||| | |||||||| || | | | | || | || || |||||||| Sbjct 1394883 TTAGCCTCAGGCGACTCGAAGGGCAGGCGAAGAGCGAGGAAAGCGTCAGCAAGACCCTGG 1394824 Query 110119 ACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAA 110178 ||||| |||||||| || | || | ||| ||| || || || || ||||| Sbjct 1394823 ACACCAAGACCAATAGGCCTGTGACGGAAGTTGCTGCGGCGTGCCTCCTCAACTGGGTAG 1394764 Query 110179 AAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCG-TGATTTCATGGAG 110237 ||| ||||||| | ||||| || || ||| | | | || || || || Sbjct 1394763 TGATTGACCTCGATGATCTTGTTGAGGTTGCGTGT-GCAGACCTGGACGACCTCGTGAAG 1394705 Query 110238 TTTGTCGTAATCGAACGTTTTCG-TCTCCTTATTGACATATTTGGGGAGAGCAATAGACG 110296 || | | |||||||| | | || || | || ||| | ||| ||||| | || | Sbjct 1394704 CTTCTTGAAATCGAAC-TCTCCGCGCTTGTAATCGACGAAAGAGGGAAGAGCGACGGAAG 1394646 Query 110297 CAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGT 110356 | || ||||| |||| ||| || | |||||||| | || || || || | || Sbjct 1394645 CCAGGTTGCAGACAGCGACCTCATCCGGTGCAGTGTATTCGATGATCTCAGTGCAGAGGT 1394586 Query 110357 TGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTAT 110416 |||| || ||| ||| | ||||||||| || || |||| |||||||| | Sbjct 1394585 TGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATCCTTGT 1394526 Query 110417 AGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCG 110475 |||||||| | ||| ||||||| || ||||| | || |||||||| | ||| | | || Sbjct 1394525 AGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATGGCGTACCAGAGCTTCT 1394466 Query 110476 GCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCA 110535 | || ||||||| | | | ||| || ||||||||| ||| | | | | Sbjct 1394465 G-AGCACGGACAGTCTCACGACCCTTACCAAGCTTCTCGTACTTCTCGTAAAGGGCAACG 1394407 Query 110536 AATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAA 110595 || || | ||||| || |||| || || || || ||| || | ||| | ||| Sbjct 1394406 AACTCATCGCCGTAAACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGAGTCCAC 1394347 Query 110596 TTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGG 110655 | || ||||| || | || ||| || || || |||||||||| || |||| || Sbjct 1394346 TCGCCGTTCTCCTGGACACGCTGCATAAAGAGATCGGGAATCCACAGAGCGTAGAAGAGA 1394287 Query 110656 TCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATA 110715 || || |||| |||| || | || ||||| | || || | ||| | | || Sbjct 1394286 TCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCCGAAGACG 1394227 Query 110716 TCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG------ACCCGCC 110769 || | |||||| || ||||| |||| || | || | | | || || || Sbjct 1394226 TCAGCGTGCCACGGCTCGAGGTAGATGGCAA---ATGCACCAGGGCGCTTGTTGCCACCC 1394170 Query 110770 TGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGAT 110829 |||| |||||||| || ||| ||| | || | |||||| ||||| | || | ||| Sbjct 1394169 TGGTCGACATAGCGGGCAGTGTTGTTGTAAACACGGAGCATGGGAATCAGACCGTTCGAT 1394110 Query 110830 TGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCA 110889 || || || || | || ||| | ||||||||||| ||||| | | ||| Sbjct 1394109 GTTCCGTTGGTTCCTCCGATATAGGAGCCAGTGGCACGAATGCGGTGGACGTTGAGGCCA 1394050 Query 110890 ATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAATACCATC 110948 ||||| || || ||| || || || ||| ||||||| | || ||||| || Sbjct 1394049 ATACCGCCAGCAGTCTTGGAGATCAACGCGCATGTCT-TGAGTGTGTCGTAGATACCCTC 1393991 Query 110949 AATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCC 111008 ||| ||| |||| || | || || ||||| || |||||||| || || || || Sbjct 1393990 AATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGTGGGGACGGTGTACC 1393931 Query 111009 CGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT-TGGGACATCTTGTTGTATG 111067 || |||||||| || || | ||| || |||| || | || ||||| | || ||||| Sbjct 1393930 AGCGTTGAAGAGCGTCGGCGACGCGTGTGTGAA-GTACTTCTGCGACATGTAGTCGTATG 1393872 Query 111068 TGTCGA 111073 | |||| Sbjct 1393871 TCTCGA 1393866 >seq1 Length=4966325 Score = 127 bits (140), Expect = 2e-24 Identities = 339/514 (66%), Gaps = 13/514 (3%) Strand=Plus/Minus Query 11491 ACCTGAATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACA 11550 ||||| | | |||||||||||| || || || || ||||| || || | ||| Sbjct 2893912 ACCTGTACGTGACGATCGAAACGTCCGGGACGAAGCAGAGCCGAGTCGAGCAGTTCGGGG 2893853 Query 11551 CGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTG 11610 |||| |||||||| |||| | || ||||| | |||||| ||||| | || | Sbjct 2893852 TGGTTGGTAGCGGCGATGAAGATAACACCAGTGGATTGGTCGAAGCCGTCAAGGTCGTTC 2893793 Query 11611 AGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGC 11670 || |||||||||| ||||| || | | ||||| ||| | | | | |||| Sbjct 2893792 AGGAGCTGGTTGAGTGTCTGG---CGGTGGTAGTTGG----CATCGCGC--GACTTACGC 2893742 Query 11671 TTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCC 11730 || ||| | |||||||| || |||||||| || ||| || ||||| || || Sbjct 2893741 TTGCCACCTATAGCGTCAAGTTCGTCGATGAAAACAATAGCAGGGGCTTTGGCGCGAGCA 2893682 Query 11731 TGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTT 11790 ||| || ||||| || ||||| || || ||||| ||| | | ||| |||| | Sbjct 2893681 GTAGTGAAGAGCTCACGGACGCGCTTAGCACCGACACCGACGTAGACCTCGTCGAACTCG 2893622 Query 11791 GCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGA 11850 | |||| | | ||| || ||| || |||||| || | ||| || |||||||| Sbjct 2893621 GATCCAGACATGTAGAAGAATGGGACACCAGCCTCACCGGCAACGGCACGCGCGAGGAGC 2893562 Query 11851 GTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA--C 11908 |||||||| |||||||| | ||| ||| | | | || ||| | | || ||||| | Sbjct 2893561 GTCTTACCAGTACCAGGAGGTCCAATGAGTAAGACACCCTTGGGTAGCCTGCCACCAAGC 2893502 Query 11909 TTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGG 11968 || |||||||||||| | ||| | |||||| || | || || |||||||| | Sbjct 2893501 TTGTT--GTAGCGCTCAGGGTGCTTCAAGAAGTCGACCACATCGAGGAGCTCCTCCTTAG 2893444 Query 11969 CGGAGTCGATACCCTCAACATCGGTGAAACGAGT 12002 | ||| || | |||||| ||||||| || Sbjct 2893443 CCTCGTCACAGCCGTGGACATCGCTGAAACGGGT 2893410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974328780600