Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3 205 1e-47 >seq3 Length=2655511 Score = 205 bits (226), Expect = 1e-47 Identities = 571/863 (66%), Gaps = 15/863 (2%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 ||||| |||| || |||| ||||| ||||| ||||||| | ||||| || | Sbjct 1394661 GGAAGAGCGACGGAAGCCAGGTTGCAGACAGCGACCTCATCCGGTGCAGTGTATTCGATG 1394602 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || || | |||||| || || || || | ||||| ||||| ||||| || Sbjct 1394601 ATCTCAGTGCAGAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTG 1394542 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||| |||||||||||||||||| |||| | || ||||| ||||| | || ||||| Sbjct 1394541 TTGGCAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATG 1394482 Query 106637 GCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTC-CGCCTCGTACT 106694 || | ||| | | || | | || ||| | | | ||| | || | |||||||| Sbjct 1394481 GCGTACCAGAGCTTCTGAGCACGG-ACAGTCTCAC-GACCCTTACCAAGCTTCTCGTACT 1394424 Query 106695 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTG 106754 | ||| ||||| | ||||| || || |||| | ||| || || || || | Sbjct 1394423 TCTCGTAAAGGGCAACGAACTCATCGCCGTAAACGTCAGCGAGGCCGGGGCACTCGTTGG 1394364 Query 106755 GACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 106814 | || | |||| ||| | || ||||| || |||| ||| || || || ||||||| Sbjct 1394363 GGCACATGAGAGTCCACTCGCCGTTCTCCTGGACACGCTGCATAAAGAGATCGGGAATCC 1394304 Query 106815 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 106874 |||| | | |||||||| | | ||| |||| || | || ||||| | | | Sbjct 1394303 ACAGAGCGTAGAAGAGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGT 1394244 Query 106875 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----C 106930 | ||||| | | || || |||||||| ||||| || |||| || | | || | Sbjct 1394243 CGAGGAAGCCGAAGACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAATGCACCAGGGC 1394184 Query 106931 TTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 106990 | | ||| | | || | |||||||| || ||| ||| | || || ||||| ||| Sbjct 1394183 GCTTGTTGCC-ACCCTGGTCGACATAGCGGGCAGTGTTGTTGTAAACACGGAGCATGGGA 1394125 Query 106991 ATAATACCATCTGATTGACCATTTGTCCC-CCGA-ATACGAGATTTATTGGCTCTCACAT 107048 || | ||| | ||| || || || || |||| ||| ||| | |||| | | Sbjct 1394124 ATCAGACCGTTCGATGTTCCGTTGGTTCCTCCGATATAGGAGCC--AGTGGCACGAATGC 1394067 Query 107049 CATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAG 107108 |||| || | |||||||| ||||| ||| ||||| ||| || | | || | Sbjct 1394066 GGTGGACGTTGAGGCCAATACCGCCAGCAGTCTTGGAGATCAACGCGCATGTCTTGAGTG 1394007 Query 107109 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 107168 | | |||||||| | || ||| ||||| || |||| |||||||| ||||||| Sbjct 1394006 TGTCGTAGATACCCTCAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGATGACATCT 1393947 Query 107169 GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGG 107227 | || ||||||||||| |||||||| || || | ||||| |||| ||| | || Sbjct 1393946 GTGGGGACGGTGTACCAGCGTTGAAGAGCGTCGGCGACGCGTGTGTGAAG-TACTTCTGC 1393888 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 ||||| | |||||||||||| | | || ||||| ||| ||||||||| | || Sbjct 1393887 GACATGTAGTCGTATGTCTCGATAGCCTTCTCGATGTCCTCCATGTGGATGCCAACAGCG 1393828 Query 107288 ACACGCATAAACATGTATTGGGG 107310 |||||||| | ||||| ||||| Sbjct 1393827 ACACGCATGAGCATGTGCTGGGG 1393805 Score = 87.8 bits (96), Expect = 2e-12 Identities = 280/432 (65%), Gaps = 2/432 (0%) Strand=Plus/Minus Query 105581 GCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGC 105640 ||| | | |||||| |||||||| ||||||||||| || | ||||| | | ||| Sbjct 1395537 GCCATGGTTCGGAGGTAGTACATTCCGGTCTTGAGGCCAAGCTTCCATCCAGCGAAGTGC 1395478 Query 105641 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGG 105700 || || | || |||| ||| || || | |||| | |||| | ||| ||| Sbjct 1395477 ATGGATGTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTCAGAGACTGAGACTGA 1395418 Query 105701 TCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCAC 105760 || |||||| |||||| | || ||||| | |||| | | ||||||||| Sbjct 1395417 TCGATGAAGGCACCACGGTCAGCAGCCATCTGGATGATGGTACGCTGCGAGATTTCCCAG 1395358 Query 105761 ACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCC 105820 || || ||||||| |||||| || || || || | | ||| || || || || Sbjct 1395357 ACAGTCTTGTAGAGAACCTTGATCTCGTCAGGAATGTTAGGGATGCGCTGGATGGATCCA 1395298 Query 105821 CCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCA 105880 ||| | | ||| | | |||||| | || || ||| ||||| || | || || Sbjct 1395297 CCCTCGGCAATGATGCGGTTCTTCATGTTCTCGGTCCAGAGACCCATGTCGACAAGGTCC 1395238 Query 105881 TTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TAGAT 105939 |||| | |||||||| | |||||||| ||||| | | ||| || || Sbjct 1395237 TTGAGCAACCAAGGGTTGACAACCTGGAACTCTCCAGCGAGCACACGAC-GAGAGTAAAT 1395179 Query 105940 GTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGT 105999 ||||| |||||||| || ||||| || || || || | || || | ||| |||||||| Sbjct 1395178 GTTCGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTAGAGGCTGT 1395119 Query 106000 TGGCATTGGTGC 106011 ||||| || || Sbjct 1395118 AGGCATAGGCGC 1395107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979125929480