Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 149 1e-30 seq2 109 1e-18 >seq1 Length=4966325 Score = 149 bits (164), Expect = 1e-30 Identities = 144/185 (78%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || ||||| || || || |||||||||| ||||| | ||||| || Sbjct 2851930 ACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCGGATAGAGTACGTCCATCCTCA 2851989 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || ||||| |||||||||||||| ||||| || Sbjct 2851990 AGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 2852049 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || ||||| || ||| ||||| |||||||| | |||||| Sbjct 2852050 ATCTTGCTCTTGACGTTGTCGATGGTATCTGAAGACTCCACCTCAAGGGTGATCGTCTTA 2852109 Query 195112 CCTGT 195116 || || Sbjct 2852110 CCGGT 2852114 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || ||| ||||| || |||||||| || ||||| ||||| || | || || | ||||| Sbjct 2851643 CAGAACGAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGTGTACGGCCATC 2851702 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || |||||||| || |||||||| | || || |||||||| |||||||| || ||||| Sbjct 2851703 CTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 2851762 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| || ||||||||| ||||| || || || || ||||| ||||| | || Sbjct 2851763 TTGAATCTTGGACTTGACGTTGTCAATAGTATCGGATGACTCGACTTCGAGGGTGATGGT 2851822 Query 195108 CTTTCCTGTCA 195118 ||| || |||| Sbjct 2851823 CTTGCCGGTCA 2851833 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| |||||||| || ||||| || || || |||||||||| ||| || | ||| ||||| Sbjct 2851190 AACCAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGCCCGTCTTC 2851249 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||||| || |||||||| || || ||||| || || || || || || || || Sbjct 2851250 CAGCTGCTTACCCGCAAAGATAAGACGCTGCTGGTCAGGTGGGATACCCTCCTTATCCTG 2851309 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||||||| || || ||||| | || || || | || | ||||| Sbjct 2851310 GATCTTAGACTTGACGTTGTCGATCGTGTCGCTAGACTCAACCTCCAATGTGATGGTCTT 2851369 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 2851370 GCCGGTGAGTGTCTTGACGAAGATTTGCAT 2851399 >seq2 Length=3786261 Score = 109 bits (120), Expect = 1e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| ||||| || || || ||||| |||| |||||| | || || |||||||| Sbjct 2400711 GTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCGTCCTCGAGCTG 2400652 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || ||||| || |||||||| || ||||| || || || Sbjct 2400651 CTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 2400592 Query 195057 TTGCTTGACGTTCTC 195071 |||||| || || Sbjct 2400591 GGACTTGACATTGTC 2400577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109478373142109