Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 338 1e-87 >seq3 Length=2655511 Score = 338 bits (374), Expect = 1e-87 Identities = 1269/1967 (65%), Gaps = 80/1967 (4%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || ||| |||||| |||| || || |||||||| |||||||| Sbjct 1395564 ACAGTGAACTGGATGGGCGCAGAGGCAGCCATGGTTCGGAGGTAGTACATTCCGGTCTTG 1395505 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTC 212669 ||||| ||| ||| || | |||||| | ||||| |||| | || || | Sbjct 1395504 AGGCCAAGCTT---CCATCCAGCGAAGTGCATGGATGTGA---TCTTGCCCATAGTAGGC 1395451 Query 212670 TGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCC 212729 | | || || || | |||||| |||||| ||| || ||||| | | Sbjct 1395450 TCCT-----TCATG-------TGGATGTTCAGAGACTGAGACTGATCGATGAAGGCACCA 1395403 Query 212730 CTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATT 212789 | |||||| ||||| | ||||| | ||| |||| ||||| || |||||| ||| Sbjct 1395402 CGGTCAGCAGCCATCTGGATGATGGTACGCTGCGAGATTTCCCAGACAGTCTTGTAGAGA 1395343 Query 212790 TCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCC--CCTGTGTA-TGGTC 212846 | |||| || || || | | |||||| ||| | || || ||| | | || | Sbjct 1395342 ACCTTGATCTCGTCAGGAATGTTAGGGATGCGCTGGATGGATCCACCCTCGGCAATGATG 1395283 Query 212847 AGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGA 212906 | | | ||||| |||| ||||||| ||| || | ||| ||||| || | Sbjct 1395282 CGGTTCTT---CATGTTCTCGGTCCAGAGACCCATGTCGACAAGGTCCTTGAGCAACCAA 1395226 Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966 |||||||| | |||||| || || | |||||| | | ||||| ||| || |||||| Sbjct 1395225 GGGTTGACAACCTGGAACTCTCCAGCGAGCACACGACGAGAGTAAATGTTCGAGGTGTAG 1395166 Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026 ||||||| || ||||||||| || |||||||| | || |||||| ||||| || || Sbjct 1395165 GGCTCGAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTAGAGGCTGTAGGCATAGGCGCA 1395106 Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCC 213086 || || ||| || | || |||| || | || | ||| ||||||||| Sbjct 1395105 ACGAGCAGAGAATTGCGGACACCGTACTGTGCAATCTTCTCCTTCAGCGAGGCCCAGTCC 1395046 Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146 || | ||| ||| | ||| ||||||||| |||| ||| || | || Sbjct 1395045 CAGAGGTCAGTG-GGTG--------TGACGCCCCACATGTCGTACTG-AAGCTGGCCCTG 1394996 Query 213147 CTC-ACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGA 213205 | || ||| ||||| ||| | | ||||||||| |||||| ||| |||||| || Sbjct 1394995 CGAGACAGGGGAGCCCTCGTACGTAGTATAGGGGCCAAACTCCTTAGCCGTCTCGCAAGA 1394936 Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC 213265 | || ||| |||| |||||| || || || |||| ||||||| ||||| ||||| Sbjct 1394935 AGAGGTCAAGGCGGCGTGGTAGATAGTCTCGAAGATCTGGGTGTTGAGTTTCTTAGCCTC 1394876 Query 213266 TGGGGACGTGAAGGGCATCATCAT-GCGTTGGAACACATCAGCCAGCCCCTGGACCCCGA 213324 || ||| |||||||| | ||| |||| | ||||| || |||||||| || | Sbjct 1394875 AGGCGACTCGAAGGGCAGGCGAAGAGCGA-GGAAAGCGTCAGCAAGACCCTGGACACCAA 1394817 Query 213325 TGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTG 213383 || || || ||||| | | ||| | | || |||||| | ||||| ||| Sbjct 1394816 GACCAATAGGCCTGTGACGGAAGTTGCTGCGGCGTGC-CTCCTCAACTGGGTAGTGATTG 1394758 Query 213384 CAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCG 213443 ||||||||||||||||||||||| ||| || | | ||| | | || | || | Sbjct 1394757 ACCTCGATGATCTTGTTGAGGTTGCGTGTGCAGACCTGGACGACCTCGTGAAGCTTCTTG 1394698 Query 213444 TGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTG 213503 || |||| | || | || | || || || || |||| | ||||||||| Sbjct 1394697 AAATCGAACTCTCCGCGCTTGTAATCGACGAAAGAGGGAAGAGCGACGGAAGCCAGGTTG 1394638 Query 213504 CAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCAT 213563 || || || ||||| | | | ||||| || |||||||| ||||| |||||| || Sbjct 1394637 CAGACAGCGACCTCATCCGGTGCAGTGTATTCGATGATCTCAGTGCAGAGGTTGGAGCTG 1394578 Query 213564 CGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATG 213623 |||||||| || ||||||| ||||| ||| |||||||| |||||||||||||||| Sbjct 1394577 CGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATCCTTGTAGAGCATG 1394518 Query 213624 TAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTG 213683 ||||| || ||||| ||| | | | || || | |||||| | | || Sbjct 1394517 AAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATGGCGTACCAGAGCTTC-------TG 1394465 Query 213684 ACCAC---CCGCCTGACAGCTCCGGGCGTAGC--CTCGTACTGTTCGTAGAGCTCGTTGA 213738 | ||| | | || || | || | ||| |||||||| ||||| || | || Sbjct 1394464 AGCACGGACAGTCTCACGAC-CCTTACCAAGCTTCTCGTACTTCTCGTAAAGGGCAACGA 1394406 Query 213739 ATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGT 213798 | || | ||| | || | || || || || ||| |||||||| |||| | Sbjct 1394405 ACTCATCGCCGTAAACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGAGTCCACT 1394346 Query 213799 CCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGT 213858 | |||| || ||| | |||||| || || || || | |||||| ||| ||| || | Sbjct 1394345 CGCCGTTCTCCTGGACACGCTGCATAAAGAGATCGGGAATCCACAGAGCGTAGAAGAGAT 1394286 Query 213859 CCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGT 213918 | | | | ||| ||| || ||| || | ||| || || ||| | |||| || Sbjct 1394285 CGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCCGAAGACGT 1394226 Query 213919 CCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGT 213975 | |||||||||||||| | |||||||||||| || || | || | ||||| ||||||| Sbjct 1394225 CAGCGTGCCACGGCTCGAGGTAGATGGCAAATGCACCAGGGCGCTTGTTGCCACCCTGGT 1394166 Query 213976 CCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTC 214035 | || | ||| ||||| | | || || | ||| | ||| ||||| || || Sbjct 1394165 CGACATAGCGGGCAGTGTTGTTGTAAACACGGAGCATGGGAATCAGACCGTTCGATGTTC 1394106 Query 214036 CGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGC 214095 |||||||||| | ||||| ||||| | ||| | | | | | | ||| || || | Sbjct 1394105 CGTTGGTTCCTCCGATATAGGAGCCAGTGGCACGAATGCGGTGGACGTTGAGGCCAATAC 1394046 Query 214096 CACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGC 214155 | || || ||||||||||| ||||| | | | || || ||| || | |||| Sbjct 1394045 CGCCAGCAGTCTTGGAGATCAACGCGCATGTCTTGAGTGTGTCGTAGATACCCTCAATGC 1393986 Query 214156 TGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGAC---GAGCCAG 214212 |||| || | | || | | ||||||| || | ||| || |||| | |||| Sbjct 1393985 TGTCTTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGTGG---GGACGGTGTACCAG 1393929 Query 214213 AGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGA-GGAGCCTGTAGGTC 214271 |||||| ||||| || || || | | |||| | || | | || | ||| ||| Sbjct 1393928 CGTTGAAGAGCGTCGGCGACGCGTGTGTGAAGTACTTCTGCGACATGTAGTC-GTATGTC 1393870 Query 214272 TCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGC 214331 || | | |||||| | | ||||||| | |||| | ||| ||||||||| Sbjct 1393869 TCGATAGCCTTCTCGATGTCCTCCATGTGGATGCCAACAGCGACACGCATGAGCATGTGC 1393810 Query 214332 TGGGGCCTCTCTATGGGTCCTTTGGGGCCCTT------GAGCAGGTAGGAGCGCTCCAGA 214385 ||||| | ||| | |||| ||| || |||||| || |||||||||| Sbjct 1393809 TGGGGGCGCTC--GGCAACCTT----GCCGTTGATGCGGAGCAGATATGAGCGCTCCAAT 1393756 Query 214386 GTCTTGAACCCAAAGTAGGAGTAGGTATGATCGTTCCCGTGTATGAGGGCAGCGTCCAGC 214445 |||||||| || ||| | |||| | ||| ||| | || |||| || ||| Sbjct 1393755 GTCTTGAATCCGAAGAACTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCACTGTTAAGC 1393696 Query 214446 TCTTCCGCGTGCTCTTGGCTCAGCTTGAAAATCTC-GTCCGAGATCA 214491 || || || || || ||| | | |||| | | ||| ||| ||||||| Sbjct 1393695 TCATCGGCATGATCCTGGATGATCTTGTAGA-CTCGGTCTGAGATCA 1393650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931530156775680