Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 282 8e-71 seq19 132 9e-26 >seq3 Length=2655511 Score = 282 bits (312), Expect = 8e-71 Identities = 721/1077 (67%), Gaps = 43/1077 (4%) Strand=Plus/Minus Query 221406 CGCAAGACTGCGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCT 221465 ||||||| |||| ||| ||||||||||| ||||| |||||| |||||||| ||| Sbjct 1394942 CGCAAGAAGAGGTCAAGGCGGCGTGGTAGATAGTCTCGAAGATCTGGGTGTTGAGTTTCT 1394883 Query 221466 TGGCCTCGGGAGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTG 221523 | ||||| || || |||||||| || || | | ||||| |||| || || ||||| Sbjct 1394882 TAGCCTCAGGCGACTCGAAGGGCAGGCGAAG-AGCGAGGAAAG-CGTCAGCAAGACCCTG 1394825 Query 221524 TACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCC-GCTTCTGGCACGGGAT 221582 || || | ||| || |||||||| | |||| ||||| || || || || | Sbjct 1394824 GACACCAAGACCAATAGGCCTGTGACGGAAGTTGCT-GCGGCGTGCCTCCTCAACTGGGT 1394766 Query 221583 AAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCA 221642 | ||||| ||||| | ||||||||||| | ||| ||| | || |||||| | Sbjct 1394765 AGTGATTGACCTCGATGATCTTGTTGAGGTTGCGTGTGCAGACCTGGACGACCTCGTGAA 1394706 Query 221643 GCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTA 221702 |||||| |||| | ||||| |||| | || || || |||| | | Sbjct 1394705 GCTTCT------TGAAATCGAACTCTCCGCGCTTGTAA------TCGACGAAAGAGGGAA 1394658 Query 221703 GGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTG--GTATACTGTATGAT 221760 | || ||| |||||||| || || || ||||| ||| | || || || | ||||| Sbjct 1394657 GAGCGACGGAAGCCAGGTTGCAGACAGCGACCTCATCC--GGTGCAGTGTATTCGATGAT 1394600 Query 221761 CTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATT 221820 ||| || ||||||||| || |||||| || |||| || || || ||| | || Sbjct 1394599 CTCAGTGCAGAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTT 1394540 Query 221821 GGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTT 221880 |||||| |||||||||||||| ||||| |||||||| ||||||| | ||||| Sbjct 1394539 GGCAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATGGC 1394480 Query 221881 GTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATAC- 221938 || |||||| | |||| || | || || ||| ||| || | ||| || ||| Sbjct 1394479 GTACCAGAGCT-TCTGAGCACGGACAGT-CTCACGACCCTTACCAAG--CTTCTCGTACT 1394424 Query 221939 -CCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGC 221997 | ||| || ||| | |||| || ||||| | || | ||||| || ||| | Sbjct 1394423 TCTCGTAAAGGGCA--ACGAACTCATCGCCGTAAACGTCAGCGAGGCCGGGGCACTCGTT 1394366 Query 221998 GGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGAT 222057 ||| ||||| ||| |||| | ||| || | ||| | |||||| ||||| || || || Sbjct 1394365 GGGGCACATGAGAGTCCACTCGCCGTTCTCCTGGACACGCTGCATAAAGAGATCGGGAAT 1394306 Query 222058 CCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAG 222117 |||||| || | |||||||| | | || ||||||| ||||| ||| |||||||| Sbjct 1394305 CCACAGAGCGTAGAAGAGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAG 1394246 Query 222118 ATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177 || | || | || | |||||||||||||||||| || |||| ||| | || || || Sbjct 1394245 GTCGAGGAAGCCGAAGACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAATGCACCAGG 1394186 Query 222178 TCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCG 222236 ||||||||||||||||| || | ||| ||| | |||| | | || || | | Sbjct 1394185 GCGCTTGTTGCCACCCTGGTCGA-CATAGCGGGCAGTGTTGTTGTAAACACGGAGCATGG 1394127 Query 222237 GTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT 222296 | | ||| ||||| ||| |||||||| || || || | || ||| | | | Sbjct 1394126 GAATCAGACCGTTCGATGTTCCGTTGGTTCCTCCGATATAGGAGCCAGTGGCACGAATG- 1394068 Query 222297 TACTGGCAGAC----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTG 222352 || ||| | ||| ||||| || || || ||||||| ||||| ||||| Sbjct 1394067 ---CGGTGGACGTTGAGGCCAATACCGCCAGCAGTCTTGGAGATCAACGCGCATGTCTTG 1394011 Query 222353 AGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGAC 222412 || ||||| ||| ||||| || ||| ||||| | || | || || || || ||| Sbjct 1394010 AGTGTGTCGTAGATACCCTCAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGATGAC 1393951 Query 222413 ATCTG-AGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTA 222468 ||||| | |||| | || ||||| || ||||| || |||||||| ||||| Sbjct 1393950 ATCTGTGGGGACGGTGTACCA-GCGTTGAAGAGCGTCGGCGACGCGTGTGTGAAGTA 1393895 >seq19 Length=853957 Score = 132 bits (146), Expect = 9e-26 Identities = 296/448 (66%), Gaps = 13/448 (3%) Strand=Plus/Minus Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATC 25938 || || || || || || || || || || ||||| ||||| |||||||| ||| ||||| Sbjct 676094 CGTCTCGTTGCTTTCGCCGCCGTTGAAGGTATCTTCTTCAGTGGTTCGTTCGCGTCCATC 676035 Query 25939 TTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998 |||||||| ||| || || ||||||||| || || ||||||||||||||| Sbjct 676034 TTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTCACATTCTCCAACGAGCTCATCTCT 675975 Query 25999 AGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT--ACACGGGCCACTTGCTCC 26056 | |||||||| | |||| ||| ||||| ||||| |||| | | | | | | | Sbjct 675974 CGTGACGAGGGCATGCACACAGACTTTGCTTGCCTTCTCTTCTCTCTGCTGAATAACCGC 675915 Query 26057 ACAAACCTTCTCAAGAGACCGTCTACAG-TATCATCAAAGAGGCTGTGGAGATCGAGAAG 26115 ||| | ||||| | ||| ||| |||||||| ||||| || |||||| || Sbjct 675914 CCAAGC-----AAAGAGGCTGTC-GCAGCTATCATCACCGAGGCCGTCACAATCGAGCAG 675861 Query 26116 GAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGC 26175 ||||| | | ||||||||| | | |||||| || Sbjct 675860 GAGTTCCTGTCTGACGCCCTCCCTTGTGCGCTGCTCGGCATGAACGCCGGCCTCATGTGC 675801 Query 26176 CAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTAC 26235 || ||||| |||| || || || | || |||| || || | ||| | |||| Sbjct 675800 CAGTACATCGAGTTCGTCGCTGATCGCCTACTGTTGGCTCTTGGCAACCCCAAGCACTAC 675741 Query 26236 AGTACGC--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACT 26293 | |||| | ||||| |||||||| ||||| ||||| ||| | | || |||||||||| Sbjct 675740 A--ACGCTACCAACCCCTTCGACTTCATGGAGAACATCTCGCTTGCTGGCAAGACCAACT 675683 Query 26294 TCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||| || ||| | || || ||||| || Sbjct 675682 TCTTCGAGAAGCGCGTTGGTGACTACCA 675655 Score = 107 bits (118), Expect = 4e-18 Identities = 177/255 (69%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| | |||||||||||||| | || ||||||||| |||||||| ||||| || Sbjct 676546 TGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAAGAGATCGATCTCTCC 676487 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT---AC 25596 |||||||| ||| |||| || | ||| ||||| ||| ||| ||| | || Sbjct 676486 AAGGACATCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGTTTCTTCATCTCCCAC 676427 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || ||||| || ||||| ||||| || || |||||||| || |||| | ||| Sbjct 676426 GTCCTCGCCTTCTTCGCTGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAGCGCTTC 676367 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | || || || ||| | ||||| || |||||||| |||||||| || || Sbjct 676366 TCGAGCGAGGTACAGATCCCTGAGGCACGATGCTTCTACGGCTTCCAGATCATGATGGAG 676307 Query 25717 AATGTGCACTCTGAG 25731 || || ||| ||||| Sbjct 676306 AACGTCCACGCTGAG 676292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842164402880