Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3 214 2e-50 >seq3 Length=2655511 Score = 214 bits (236), Expect = 2e-50 Identities = 574/865 (66%), Gaps = 17/865 (2%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| ||||||| ||||| | ||||||||| ||| ||||| || | Sbjct 1393804 CCCCCAGCACATGCTCATGCGTGTCGCTGTTGGCATCCACATGGAGGACATCGAGAAGGC 1393863 Query 75271 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | |||||||||||| | ||||| || | ||| |||| ||||| | || || |||| Sbjct 1393864 TATCGAGACATACGACTACATGTCGCAGAAGTAC-TTCACACACGCGTCGCCGACGCTCT 1393922 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| ||||||||||| || |||||||| |||||||| |||| || ||||| | Sbjct 1393923 TCAACGCTGGTACACCGTCCCCACAGATGTCATCCTGCTTCCTCATCGACATGAAGGAAG 1393982 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 || || | |||||||| | || || | | || ||| ||||| ||| |||| Sbjct 1393983 ACAGCATTGAGGGTATCTACGACACACTCAAGACATGCGCGTTGATCTCCAAGACTGCTG 1394042 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGGA-C 75507 | |||||||| | || |||| | | |||| | ||| ||| |||| ||| | Sbjct 1394043 GCGGTATTGGCCTCAACGTCCACCGCATTCGTGCCACTGG--CTCCTATATCGGAGGAAC 1394100 Query 75508 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 75567 || || ||| | ||| | ||||| ||||| || || | ||| ||| || ||||| Sbjct 1394101 CAACGGAACATCGAACGGTCTGATTCCCATGCTCCGTGTTTACAACAACACTGCCCGCTA 1394160 Query 75568 TGTAAATCAAGCGGGGCGTCGCAAGGG-----GTCCATC-GCGGTCTACTTGGAACCATG 75621 ||| | || | | ||| | ||| | || ||| || ||||| | || || || Sbjct 1394161 TGTCGACCAGG-GTGGCAAC--AAGCGCCCTGGTGCATTTGCCATCTACCTCGAGCCGTG 1394217 Query 75622 GCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCG 75681 ||| || || || | | ||||| || | | ||||| || | || |||| ||| Sbjct 1394218 GCACGCTGACGTCTTCGGCTTCCTCGACCTGAGGAAGAACCACGGCAAGGAGGAGGTTCG 1394277 Query 75682 GTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGA 75741 | | |||||||| | | ||||||||||| || || || ||| |||| || |||| Sbjct 1394278 TGCTCGCGATCTCTTCTACGCTCTGTGGATTCCCGATCTCTTTATGCAGCGTGTCCAGGA 1394337 Query 75742 GGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGG 75801 | || | ||| |||| | || || || || || || ||| | |||| || Sbjct 1394338 GAACGGCGAGTGGACTCTCATGTGCCCCAACGAGTGCCCCGGCCTCGCTGACGTTTACGG 1394397 Query 75802 TGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGT 75861 || ||||| | ||||| ||| ||||| || || |||| | || |||||| Sbjct 1394398 CGATGAGTTCGTTGCCCTTTACGAGAAGTACGAGAAGCTTGGTAAGGGTCGTGAGACTGT 1394457 Query 75862 ACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCAT 75920 | || | || | | ||| | || ||||| | | ||||| |||||||| | || | Sbjct 1394458 CCGTGCT-CAGAAGCTCTGGTACGCCATTCTTGAGGCTCAGACCGAGACTGGTAACCCCT 1394516 Query 75921 ATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980 ||||| |||||||||||| |||| |||||| ||||| ||||| | || || ||| Sbjct 1394517 TCATGCTCTACAAGGATGCTGCCAACAGGAAGAGCAACCAGAAGAACCTCGGTACCATCC 1394576 Query 75981 AGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTT 76040 ||||| || || ||||| || || | || ||||| | ||||||| ||||| | Sbjct 1394577 GCAGCTCCAACCTCTGCACTGAGATCATCGAATACACTGCACCGGATGAGGTCGCTGTCT 1394636 Query 76041 GCAATTTGGCATCAATCGCCCTTCC 76065 |||| |||| || |||| ||||| Sbjct 1394637 GCAACCTGGCTTCCGTCGCTCTTCC 1394661 Score = 93.3 bits (102), Expect = 5e-14 Identities = 279/431 (65%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 76511 GCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCA 76570 || || ||||| |||||||| ||| | || || | || || || || ||||| || || Sbjct 1395107 GCGCCTATGCCTACAGCCTCTACCTCGCAGATTCTTGGCAACAACGAGTGCTTCGAGCCC 1395166 Query 76571 TACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAG 76630 ||||| | ||||| ||| | | ||||| || ||||| |||||||| Sbjct 1395167 TACACCTCGAACATTTACTCTCGTCGTGTGCTCGCTGGAGAGTTCCAGGTTGTCAACCCT 1395226 Query 76631 CACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATG 76690 | |||| ||||| | || ||||||||| || || | |||||| | | ||| Sbjct 1395227 TGGTTGCTCAAGGACCTTGTCGACATGGGTCTCTGGACCGAGAACATGAAGAACCGCATC 1395286 Query 76691 GTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTC 76750 | | |||||| ||||| || ||| | | || || || || |||||| |||| Sbjct 1395287 ATTGCCGAGGGTGGATCCATCCAGCGCATCCCTAACATTCCTGACGAGATCAAGGTTCTC 1395346 Query 76751 TACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGT 76810 ||| || || ||||||||| | | |||| | ||||| || || |||||| Sbjct 1395347 TACAAGACTGTCTGGGAAATCTCGCAGCGTACCATCATCCAGATGGCTGCTGACCGTGGT 1395406 Query 76811 CGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAG 76870 |||||| ||||| ||| | |||| | |||| | || || ||| |||| Sbjct 1395407 GCCTTCATCGATCAGTCTCAGTCTCTGAACATCCACATGAAGGAGCCTACTATGGGCAAG 1395466 Query 76871 CTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTC 76930 || | || ||||| | | ||||| | || ||||| |||||||||||||| ||| Sbjct 1395467 ATCACATCCATGCACTTCGCTGGATGGAAGCTTGGCCTCAAGACCGGAATGTACTACCTC 1395526 Query 76931 CGATCAAAGGC 76941 ||| | | ||| Sbjct 1395527 CGAACCATGGC 1395537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596567907233760