Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2 111 5e-19 seq19 87.8 5e-12 >seq2 Length=3786261 Score = 111 bits (122), Expect = 5e-19 Identities = 179/255 (70%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGC-GTCATATAGCCG 251465 || || ||||| ||| || || ||||| |||| ||||| || | || | |||| || Sbjct 903854 ATCAGTCCACAGATATCGCAGACGTGGACCGTGTACGCATCCGAGACCGTGA-ATAGACG 903796 Query 251466 ACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAA 251525 |||| |||| || ||||| || | ||||||||||||||| |||||||| ||||| Sbjct 903795 CTCCTTCAAGAAGGCAGCGGCACCATGGGCAATCATACAATCACGTTCCATTTCTCCGAA 903736 Query 251526 ACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGG 251585 ||| || || || || | || | ||||||| ||||||| || ||||| | | || Sbjct 903735 ACGCAGTCCTCCGTCCCTGGCACGACCCTCGACAGGCTGGCGTGTGAGGATCTGTAGCGG 903676 Query 251586 ACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGC 251645 || | ||| ||| ||| |||| ||||||||| | |||||||||||| | | Sbjct 903675 TCCACGCGCACGGGCATGGATCTTGTCATCGACCATATGCCTCAGACGCTGGTAGTACGT 903616 Query 251646 GGGACCGATGAAGAT 251660 || || | |||||| Sbjct 903615 AGGCCCCAAGAAGAT 903601 >seq19 Length=853957 Score = 87.8 bits (96), Expect = 5e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133451 AAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGT 133510 ||||| |||||||||| | |||||| |||||| | | ||| || | ||| Sbjct 676151 AAGAAGGCTGACTGGGCCCTGCGATGGATTTCTGACAAGAACTCCACTTTCGCCAACCGT 676092 Query 133511 CTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTT 133570 ||||||||||| || | || || || || || ||||||||| ||||| || || || Sbjct 676091 CTCGTTGCTTTCGCCGCCGTTGAAGGTATCTTCTTCAGTGGTTCGTTCGCGTCCATCTTC 676032 Query 133571 TGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGG 133630 ||||| || ||||||||| | | || || || || || ||||| || || || | Sbjct 676031 TGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTCACATTCTCCAACGAGCTCATCTCTCGT 675972 Query 133631 GACGAGGCACTTCACACCGAATTTGC 133656 ||||||| | ||||| || ||||| Sbjct 675971 GACGAGGGCATGCACACAGACTTTGC 675946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471813319310499