Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq27 190 2e-42 seq3 161 1e-33 seq19 152 6e-31 seq17 140 4e-27 seq7 107 2e-17 seq14 102 1e-15 seq1 91.5 2e-12 >seq27 Length=186226 Score = 190 bits (210), Expect = 2e-42 Identities = 261/362 (72%), Gaps = 2/362 (1%) Strand=Plus/Plus Query 1573901 GCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGCGCGGC 1573960 ||| |||| ||||| ||||| |||| || || ||||| ||| | |||| || Sbjct 132574 GCCTGGCATCGGCAAAACCACCTCCATCCTCTGCCTCGCGCGCCAGCTCCTCGGCGACGC 132633 Query 1573961 CGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCG 1574020 | | | || |||||||| || |||||||| ||||||||||||||| ||||||||||||| Sbjct 132634 CTACAAGGAAGCCGTGCTGGAGCTCAACGCCTCGGACGAGCGCGGCATCGACGTCGTGCG 132693 Query 1574021 CAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACAAGGT 1574080 ||| ||||| | |||| || | || ||| || || || ||||| ||| | Sbjct 132694 CAACCGAATCAAAGGCTTCGCCCAGAAAAAAGTCACCCTCCCCCCGGGCCGCCAGAAGCT 132753 Query 1574081 GATCATCCTCGACGAGGCCGACTGCCTCA-CGTCGGCGGCCCAGCAGGCCCTGCGGTCCA 1574139 |||||||||||||||||||| || | | | |||| |||||||||||||| || || Sbjct 132754 CGTCATCCTCGACGAGGCCGACAGCATGACCAGCGGC-GCCCAGCAGGCCCTCCGCCGCA 132812 Query 1574140 CCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGG 1574199 ||||||| | ||| | || || ||||| ||| | ||||||||| ||| | | Sbjct 132813 CCATGGAGATCTACAGCGCAACCACCCGCTTCGCCTTCGCGTGCAACCAGTCCAACAAGA 132872 Query 1574200 TCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTTTGTGCGCCTGGGTGACGCCC 1574259 |||||||| |||| || ||||||||||| ||||||| | |||||| ||||||| Sbjct 132873 TCATCGAGCCCCTGCAGTCCCGCTGCGCCATCCTGCGCTACGCCCGCCTGACAGACGCCC 132932 Query 1574260 AG 1574261 || Sbjct 132933 AG 132934 >seq3 Length=2655511 Score = 161 bits (178), Expect = 1e-33 Identities = 218/301 (72%), Gaps = 2/301 (1%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||| ||||| || |||| ||| | || ||||||||||| | || ||||| || Sbjct 1394170 CTGGTCGACATAGCGGGCAGTGTTGTTGTAAACACGGAGCATGGGAATCAGACCGTTCGA 1394111 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || | | |||| ||| | ||| || | ||| || | ||| Sbjct 1394110 TGTTCCGTTGGTTCCTCCGATATAGGAGCCAGTGGCACGAATGCGGTGGACGTTGAGGCC 1394051 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCCT 1630243 || ||||| || | ||||||||| | |||||| ||| ||||| ||||||||||| |||| Sbjct 1394050 AATACCGCCAGCAGTCTTGGAGATCAACGCGCA-TGTCTTGAGTGTGTCGTAGATACCCT 1393992 Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303 | || ||| |||||||||| | ||| ||||| || || | || ||| || || | Sbjct 1393991 CAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGTGGGGACGGTGTAC 1393932 Query 1630304 CGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGG 1630363 | |||||||||||||| |||| ||| ||||| ||| | |||||||| |||||| | Sbjct 1393931 CAGCGTTGAAGAGCGTCGGCGACGCGTGTGTGAAGTACTTCTGCGACATGTAGTCGTATG 1393872 Query 1630364 T 1630364 | Sbjct 1393871 T 1393871 Score = 120 bits (132), Expect = 4e-21 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 1628447 GCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCT 1628506 |||||||||| || ||||||| ||||| ||||| ||||| || || |||||||| Sbjct 1394324 GCATAAAGAGATCGGGAATCCACAGAGCGTAGAAGAGATCGCGAGCACGAACCTCCTCCT 1394265 Query 1628507 TGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGT 1628566 ||||||||||||| | |||||||| || ||| | ||| |||||||||||||| |||| Sbjct 1394264 TGCCGTGGTTCTTCCTCAGGTCGAGGAAGCCGAAGACGTCAGCGTGCCACGGCTCGAGGT 1394205 Query 1628567 AGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 || |||||| || || ||||||| ||| || Sbjct 1394204 AGATGGCAAATGCACCAGGGCGCTTGTTGCCACC 1394171 Score = 87.8 bits (96), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103 || ||||||||||| ||||| || ||||| || |||||| || | ||| | || Sbjct 1946326 GAAGACAGCATCGGTGGCACAGTAACGTGTGTCATCCGCAACTGTCCTACTGGCTTAGGA 1946267 Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 ||||| || || |||||| ||||||| |||||| || |||||||| || || || || Sbjct 1946266 GAGCCATGTTTCGACAAGCTCGAGGCGAAGCTCGCGCATGCCATGCTCTCTATTCCAGCT 1946207 Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTT 19193 || || || ||||| || || | | ||||| Sbjct 1946206 ACTAAAGGCTTCGAAATCGG-ATCTGGTTT 1946178 >seq19 Length=853957 Score = 152 bits (168), Expect = 6e-31 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || |||||| |||||| |||||||||||||| | |||||||| Sbjct 675649 GCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGCGAGATG 675708 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||||||| | || || | | Sbjct 675709 TTCTCCATGAAGTCGAAGGGGTTGGTAGCGTTGTAGTGCTTGGGGTTGCCAAGAGCCAAC 675768 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || ||||| || ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 675769 AGTAGGCGATCAGCGACGAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAGC 675828 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||||| || || | || || ||||| | |||||| |||||||||| |||| Sbjct 675829 AGCGCACAAGGGAGGGCGTCAGACAGGAACTCCTGCTCGATTGTGACGGCCTCGGTGATG 675888 Query 868931 AT 868932 || Sbjct 675889 AT 675890 Score = 116 bits (128), Expect = 5e-20 Identities = 179/255 (70%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694 ||||| |||||| || ||||||||||||||| ||| | |||| | | || || Sbjct 676298 GTGGACGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCAGGGATCTGTAC 676357 Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754 ||| || ||| || || | ||||||||| || ||||| ||| ||| ||||| || Sbjct 676358 CTCGCTCGAGAAGCGCTCGACAAGGTTCTCGTTGACAATGCCATCGGAGGCAGCGAAGAA 676417 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGGAC 869811 || |||||||| ||| ||| |||||||||||| ||| || ||||| | Sbjct 676418 GGCGAGGACGTGGGAGATGAAGAAACGCTCGTCGTCGTTGAGGCGCTTGTTCCAGTCGTG 676477 Query 869812 GGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | |||| | ||| || | ||| || |||||||||| || ||||||||||| ||||| Sbjct 676478 GATGTCCTTGGAGAGATCGATCTCTTCTGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTA 676537 Query 869872 CATCTCCCATACTTG 869886 ||| | ||| || || Sbjct 676538 CATTTGCCAGACCTG 676552 >seq17 Length=858475 Score = 140 bits (154), Expect = 4e-27 Identities = 100/115 (87%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||||||||||||||| ||| |||||||||| | || |||||| | || |||||| Sbjct 508866 GCTGCCAACTACCTCGACATTAAGGCTCTGCTCGACGTCGGCTGCAAGACCGTCGCCAAC 508925 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||||| ||||| ||||||||||||||||| |||||| || ||| Sbjct 508926 ATGATCAAGGGCAAGTCTCCCGACGAGATCCGCAAGACCTTCAACATCCAGAACG 508980 >seq7 Length=1370890 Score = 107 bits (118), Expect = 2e-17 Identities = 152/209 (73%), Gaps = 5/209 (2%) Strand=Plus/Plus Query 1852044 CGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGCACGA 1852103 ||||||||||| ||| || ||| ||||||||||||| || || || || || || | Sbjct 21685 CGATCTTGGAGTCGGGATCCGAGGCACTCATCTTGCCGC-CTTGGAGA--CCTGGTACCA 21741 Query 1852104 GCGGGTTGA-GCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGCGCA 1852162 |||||| | ||| ||| ||||| | ||||||| |||||| || ||| Sbjct 21742 TCGGGTTCATGCAA-TGGGCGCGCTCCTTGTAGCCGATCTTGGGCAGGATATCCTTTGCA 21800 Query 1852163 AAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 1852222 | || || ||||||||||| ||| || || || || ||| ||||| |||| ||| Sbjct 21801 AGAGCGAAAATCTTGCGCTGATCGACGCCACCGAATTGCATGTCAACGTCAAGGTATTGC 21860 Query 1852223 TCGTCGAGGGCCTGCATGAGCGGGTAGAG 1852251 || |||||||||||||||||||||||||| Sbjct 21861 TCATCGAGGGCCTGCATGAGCGGGTAGAG 21889 >seq14 Length=954076 Score = 102 bits (112), Expect = 1e-15 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 1254380 GGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGC 1254439 |||||||||||| |||| | ||| ||| |||||| || || || | ||| Sbjct 763735 GGTCTGGATCTCACGCGAGGAGATGGTGGACTTCTTGTTGTAGGCAGCGAGCTTGGAGGC 763676 Query 1254440 CTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTT 1254499 ||||||| ||| ||| |||| ||||||||||| |||||||||| || ||||| | Sbjct 763675 CTCGGTGGCGACGCGCTCGAAGATGTCGTTGACGAACGAGTTCAGGATGGACATGGCGCG 763616 Query 1254500 GTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1254538 ||||||||| || ||||||||| ||||||||||| || Sbjct 763615 GTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGAC 763577 >seq1 Length=4966325 Score = 91.5 bits (100), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 1726961 GACCCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTT 1727020 ||| |||||| |||||||||| || ||| |||||||| ||||| || ||||||||||| Sbjct 599014 GACTCGTCGATGTCGGGGTCGTTGATCAGACCCTTCCAGCCGACCGTTGTGCGCGGCTTC 598955 Query 1727021 TCGACATAGGCGCGCATGACCACGCAAA 1727048 |||| ||||||||||||| | ||||| Sbjct 598954 TCGAGGTAGGCGCGCATGATGATGCAAA 598927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107120571316959