Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1 100 3e-16 seq3 87.8 2e-12 >seq1 Length=4966325 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || ||||| ||||| || || || | | Sbjct 2851627 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACTATCACGCTGGAGGTTGAGTCGTCG 2851568 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| ||||| || ||||| || || || ||||| || || Sbjct 2851567 GACACGATCGACAACGTAAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCAG 2851508 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| ||||| || ||| ||||||| | | | || || || ||| Sbjct 2851507 CAGCGTCTCATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACACTTTCGGACTACAAC 2851448 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| ||||| || ||||||||| Sbjct 2851447 ATCCAGAAGGAGTCGACGCTCCACTTGGTG 2851418 >seq3 Length=2655511 Score = 87.8 bits (96), Expect = 2e-12 Identities = 192/285 (67%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 138433 GCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATC 138492 ||||||||||| || |||||| ||| | | ||| || | || | ||| || | | Sbjct 1395291 GCAATGATGCGGTTCTTCATGTTCTCGGTCCAGAGACCCATGTCGACAAGGTCCTTGAGC 1395232 Query 138493 AGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTG 138552 | | ||| | ||||| || || || || | || |||||| ||||||||| | Sbjct 1395231 AACCAAGGGTTGACAACCTGGAACTCTCCAGCGAGCACACGACGAGAGTAAATGTTCGAG 1395172 Query 138553 GTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATG 138612 ||| | ||||| || | |||||||| || |||||||| | || | || || ||||| Sbjct 1395171 GTGTAGGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTAGAGGCTGTAGGCATA 1395112 Query 138613 TACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGT-TCCTTGAGCGACGA 138671 ||| || | |||||||| || | ||||| | | | || | ||||| ||||| | Sbjct 1395111 GGCGCAACGAGCAGAGAATTGCGGACACCGT-ACTGTGCAATCTTCTCCTTCAGCGAGGC 1395053 Query 138672 CCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTG 138716 ||||||||| | || | ||| | | |||||| |||||||| Sbjct 1395052 CCAGTCCCAGAGGTCAGTGGGTGTGACGCCCCACATGTCGTACTG 1395008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896323415560