Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq27 199 6e-45 seq19 141 1e-27 seq3 136 6e-26 seq17 127 3e-23 seq7 118 2e-20 seq14 102 1e-15 seq1 89.7 8e-12 >seq27 Length=186226 Score = 199 bits (220), Expect = 6e-45 Identities = 296/413 (72%), Gaps = 10/413 (2%) Strand=Plus/Plus Query 2019005 CGGCAACATGCCCAACCTCTTGCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGCAT 2019064 ||| |||||||| || | | | | ||| ||| |||| ||||| ||||| ||| Sbjct 132541 CGGAAACATGCCACACATGATCATCTCAGGCATGCCTGGCATCGGCAAAACCACCTCCAT 132600 Query 2019065 CGCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAA 2019124 | ||||| |||||| |||| | |||| ||| | | || |||||||| || ||||| Sbjct 132601 CCTCTGCCTCGCGCGCCAGCTCCTCGGCGACGCCTACAAGGAAGCCGTGCTGGAGCTCAA 132660 Query 2019125 TGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTA---GAATCATCAAGCATCACGCTTC 2019181 || || |||||||||||| | ||||||||||| | |||||| | || || | | Sbjct 132661 CGCCTCGGACGAGCGCGGCATCGACGTCGTGCGCAACCGAATCAA-AGGCTTCGCCCA-- 132717 Query 2019182 GAAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTG 2019241 ||||| | || ||| || || |||||||| ||| | |||||||||| ||||||||| | Sbjct 132718 GAAAAAAGTCACCCTCCCCCCGGGCCGCCAGAAGCTCGTCATCCTCGACGAGGCCGACAG 132777 Query 2019242 CCTTACGT-CGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGA 2019300 | | || ||||| |||||||||||||||| |||||||| | |||| | || | Sbjct 132778 CATGACCAGCGGCG-CCCAGCAGGCCCTCCGCCGCACCATGGAGATCTACAGCGCAACCA 132836 Query 2019301 CGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTT 2019360 | || || || | || |||||| ||| | | ||||||| |||| ||| ||| | Sbjct 132837 CCCGCTTCGCCTTCGCGTGCAACCAGTCCAACAAGATCATCGAGCCCCTGCAGTCCCGCT 132896 Query 2019361 GCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAGATC--GCCGCGCGTC 2019411 |||||||| |||||| || ||||| || ||||||||| || || ||||||| Sbjct 132897 GCGCCATCCTGCGCTACGCCCGCCTGACAGACGCCCAGGTCGTGCGGCGCGTC 132949 >seq19 Length=853957 Score = 141 bits (156), Expect = 1e-27 Identities = 186/253 (74%), Gaps = 6/253 (2%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || |||||| |||||| |||||||||||||| | | Sbjct 675641 TGACACCAGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCAGCAA 675700 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| |||||| | ||| ||||||| | ||||||||| | || | Sbjct 675701 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTAGCGTTGTAGTGCTTGGGGTTGCCAA 675760 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | || ||||| || |||||||| || |||||||||||||||||| ||||||||| Sbjct 675761 GAGCCAACAGTAGGCGATCAGCGACGAACTCGATGTACTGGCACATGAGGCCGGCGTTCA 675820 Query 794071 TGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACA--AACTCTTTCTCGATCTCGACGG 794127 |||||| ||||| || ||| || | | | |||| ||||| | |||||| ||||| Sbjct 675821 TGCCGAGCAGCGCACAAGGG-AGGGCGT--CAGACAGGAACTCCTGCTCGATTGTGACGG 675877 Query 794128 CCTCGATGATGAT 794140 ||||| ||||||| Sbjct 675878 CCTCGGTGATGAT 675890 Score = 113 bits (124), Expect = 7e-19 Identities = 149/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || | || ||||| || |||||| || | |||||||| || ||||| Sbjct 676341 GCCTCAGGGATCTGTACCTCGCTCGAGAAGCGCTCGACAAGGTTCTCGTTGACAATGCCA 676400 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGA-- 796267 ||| ||| ||||| |||||||||||||| ||| ||| ||||||||||||| ||| Sbjct 676401 TCGGAGGCAGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAACGCTCGTCGTCGTTGAGG 676460 Query 796268 -GCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 || | ||||| | |||| | ||| |||| ||| || |||||||| || || Sbjct 676461 CGCTTGTTCCAGTCGTGGATGTCCTTGGAGAGATCGATCTCTTCTGCGGTCCAGAAAGAA 676520 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCA 796352 ||||||||||| |||||||| | ||| Sbjct 676521 GCCTCGGCCTTCTTGTACATTTGCCA 676546 >seq3 Length=2655511 Score = 136 bits (150), Expect = 6e-26 Identities = 210/300 (70%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||||||||| || |||| ||| | || ||||||||||| | || ||||| || Sbjct 1394170 CTGGTCGACATAGCGGGCAGTGTTGTTGTAAACACGGAGCATGGGAATCAGACCGTTCGA 1394111 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || | | |||| ||| | ||| || | ||| || | ||| Sbjct 1394110 TGTTCCGTTGGTTCCTCCGATATAGGAGCCAGTGGCACGAATGCGGTGGACGTTGAGGCC 1394051 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || ||||| || | ||||||||| | |||||| | || || || |||||||| ||||| Sbjct 1394050 AATACCGCCAGCAGTCTTGGAGATCAACGCGCATGTCTTGAGTGTGTCGTAGATACCCTC 1393991 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||| |||||||||| | || ||||| || || | || ||| || || || Sbjct 1393990 AATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGTGGGGACGGTGTACC 1393931 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 || ||||||||||| |||| ||| ||| | ||| || |||||| ||||| || Sbjct 1393930 AGCGTTGAAGAGCGTCGGCGACGCGTGTGTGAAGTACTTCTGCGACATGTAGTCGTATGT 1393871 Score = 136 bits (150), Expect = 6e-26 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 2071801 AGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACC---ACGCGG 2071857 |||||||| |||| ||||| | ||| | ||| |||||| || || || || Sbjct 1394382 AGGCCGGGGCACTCGTTGGGGCACATGAGAGTCCACTCGCCGT---TCTCCTGGACACGC 1394326 Query 2071858 CGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCC 2071917 ||||||| || ||| ||||||| |||| ||||||||||| || || ||||||| Sbjct 1394325 TGCATAAAGAGATCGGGAATCCACAGAGCGTAGAAGAGATCGCGAGCACGAACCTCCTCC 1394266 Query 2071918 TTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGG 2071977 |||||||||||||| |||||||||| || ||| || ||| |||||||||||||| ||| Sbjct 1394265 TTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCCGAAGACGTCAGCGTGCCACGGCTCGAGG 1394206 Query 2071978 TAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||| |||||| || || ||||||| ||| || Sbjct 1394205 TAGATGGCAAATGCACCAGGGCGCTTGTTGCCACC 1394171 Score = 86.0 bits (94), Expect = 1e-10 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 2069603 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGA 2069662 ||||||| || || || || | |||||| || || | ||| ||||| ||| | Sbjct 1395224 GGTTGACAACCTGGAACTCTCCAGCGAGCACACGACGAGAGTAAATGTTCGAGGTGTAGG 1395165 Query 2069663 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 2069722 |||| | |||| ||||||| || |||||||| || | ||| || ||||| |||| | Sbjct 1395164 GCTCGAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTAGAGGCTGTAGGCATAGGCGCAA 1395105 Query 2069723 CGAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCC 2069782 ||||||| || ||||| | ||||||||| | | | || ||| | | ||||||||| Sbjct 1395104 CGAGCAGAGAATTGCGGACACCGTACTGTGCAATCTTCTCCTTCAGCGAGGCCCAGTCCC 1395045 Query 2069783 AGCGG 2069787 || || Sbjct 1395044 AGAGG 1395040 >seq17 Length=858475 Score = 127 bits (140), Expect = 3e-23 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || ||||||||||||||||| ||| | || ||||| | || ||||||||||| |||||| Sbjct 508866 GCTGCCAACTACCTCGACATTAAGGCTCTGCTCGACGTCGGCTGCAAGACCGTCGCCAAC 508925 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||||||||| ||||| || |||||||||||||| |||||| || ||| Sbjct 508926 ATGATCAAGGGCAAGTCTCCCGACGAGATCCGCAAGACCTTCAACATCCAGAACG 508980 >seq7 Length=1370890 Score = 118 bits (130), Expect = 2e-20 Identities = 172/237 (73%), Gaps = 11/237 (5%) Strand=Plus/Plus Query 2411361 GATGACCTCGTCGCAATCGTCGAGATCA---ATCTTGGAGGCGGCCTCGCTGGCGCTCAT 2411417 || |||||| ||| | ||||||| || ||||||||| ||| || ||| ||||| Sbjct 21659 GACGACCTCTTCG---TTGTCGAGAACATCGATCTTGGAGTCGGGATCCGAGGCACTCAT 21715 Query 2411418 CTTGCCGTCCTTGGTGAGGCCCGGCACCAGCGGGTTGA-GCAGGTGGATGCGCTTGCGGT 2411476 ||||||| |||||| || || || |||| |||||| | ||| ||| ||||| || Sbjct 21716 CTTGCCG-CCTTGGAGA--CCTGGTACCATCGGGTTCATGCAA-TGGGCGCGCTCCTTGT 21771 Query 2411477 AGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGC 2411536 |||| | | |||||| || |||| || || ||||||||||| ||| || | Sbjct 21772 AGCCGATCTTGGGCAGGATATCCTTTGCAAGAGCGAAAATCTTGCGCTGATCGACGCCAC 21831 Query 2411537 CAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGA 2411593 | || || ||| ||||| |||| ||||| ||||||||||||||||||||||||| Sbjct 21832 CGAATTGCATGTCAACGTCAAGGTATTGCTCATCGAGGGCCTGCATGAGCGGGTAGA 21888 >seq14 Length=954076 Score = 102 bits (112), Expect = 1e-15 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 1485546 GGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC-GCCAGGCGGCCGG 1485604 |||||||||||| || | | ||| ||| |||||| || || || || | || Sbjct 763735 GGTCTGGATCTCACGCGAGGAGATGGTGGACTTCTTGTT-GTAGGCAGCGAGCTTGGAGG 763677 Query 1485605 CCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATT 1485664 |||||||| ||| ||| |||| ||||||||||| |||||||||| ||| ||||| | Sbjct 763676 CCTCGGTGGCGACGCGCTCGAAGATGTCGTTGACGAACGAGTTCAGGATGGACATGGCGC 763617 Query 1485665 TGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||| || ||||||||| ||||||||||| || Sbjct 763616 GGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGAC 763577 >seq1 Length=4966325 Score = 89.7 bits (98), Expect = 8e-12 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 2175306 GACCCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTT 2175365 ||| |||||| |||||||||| || ||| |||||||| ||||| || ||||||||||| Sbjct 599014 GACTCGTCGATGTCGGGGTCGTTGATCAGACCCTTCCAGCCGACCGTTGTGCGCGGCTTC 598955 Query 2175366 TCGACATAGGCGCGCATGA 2175384 |||| ||||||||||||| Sbjct 598954 TCGAGGTAGGCGCGCATGA 598936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916222252974653