Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3 156 4e-33 >seq3 Length=2655511 Score = 156 bits (172), Expect = 4e-33 Identities = 476/730 (65%), Gaps = 7/730 (1%) Strand=Plus/Minus Query 147682 TTTTCGTACCGCTCGTACAACCGCT-CAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGG 147740 || |||||| |||||| || || | ||||| |||||||| || || |||||||| Sbjct 1394433 TTCTCGTACTTCTCGTA-AAGGGCAACGAACTCATCGCCGTAAACGTCAGCGAGGCCGGG 1394375 Query 147741 ACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAG 147800 |||| | || ||||| || | |||| | ||| | | | || || ||||||| || Sbjct 1394374 GCACTCGTTGGGGCACATGAGAGTCCACTCGCCGTTCTCCTGGACACGCTGCATAAAGAG 1394315 Query 147801 ATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTT 147860 ||| || | |||||| ||||| | |||||||| || ||||| ||| ||| Sbjct 1394314 ATCGGGAATCCACAGAGCGTAGAAGAGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTT 1394255 Query 147861 GCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAG 147920 ||| | || | || ||| ||| |||||||| || || | ||||| ||| | Sbjct 1394254 CTTCCTCAGGTCGAGGAAGCCGAAGACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAA 1394195 Query 147921 CGCACCTTTACGCTTT---CCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCG 147977 ||||| ||||| || ||||||||||||| ||| | ||||||| | || || Sbjct 1394194 TGCACCAGGGCGCTTGTTGCCACCCTGGTCGACATAGCGGGCAGTGTTGTTGTAAACACG 1394135 Query 147978 CACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGC 148037 | |||||| ||| ||| ||| || |||||||| ||| | | ||| ||| Sbjct 1394134 GAGCATGGGAATCAGACCGTTCGATGTTCCGTTGGTTCCTCCGATATAGGAGCCAGTGGC 1394075 Query 148038 TCGCACTTCGTGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAAT 148096 || | ||| ||||| | |||||| ||||| || || ||| || || ||||| Sbjct 1394074 ACGAATGCGGTGGACGTTGAGGCCAATACCGCCAGCAGT-CTTGGAGATCAACGCGCATG 1394016 Query 148097 CGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACG 148156 | ||| |||||| || || |||||||| | || | | | | | || || | Sbjct 1394015 TCTTGAGTGTGTCGTAGATACCCTCAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGG 1393956 Query 148157 AACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACA 148216 | |||| || || | | || || || ||| || || || |||||| || || Sbjct 1393955 ATGACATCTGTGGGGACGGTGTACCAGCGTTGAAGAGCGTCGGCGACGCGTGTGTGAAGT 1393896 Query 148217 ATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGC 148276 | || || ||| | || ||||| ||||| | |||||||| || ||| |||| Sbjct 1393895 ACTTCTGCGACATGTAGTCGTATGTCTCGATAGCCTTCTCGATGTCCTCCATGTGGATGC 1393836 Query 148277 CCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGA 148336 | | ||||| ||||||||||||||||| || || |||||||| | |||||| || Sbjct 1393835 CAACAGCGACACGCATGAGCATGTGCTGGGGGCGCTCGGCAACCTTGCCGTTGATGCGGA 1393776 Query 148337 GAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGT 148396 | |||||| || | || ||| | || ||| ||| ||| | || || | |||| Sbjct 1393775 GCAGATATGAGCGCTCCAATGTCTTGAATCCGAAGAACTGGTAGTTGAAGTCGCGGTCGT 1393716 Query 148397 AAGCGATGGC 148406 | ||||||| Sbjct 1393715 AGACGATGGC 1393706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609847615720