Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq27 194 2e-43 seq19 163 4e-34 seq3 111 2e-18 seq14 87.8 3e-11 >seq27 Length=186226 Score = 194 bits (214), Expect = 2e-43 Identities = 261/361 (72%), Gaps = 2/361 (1%) Strand=Plus/Minus Query 332852 TGGGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATG 332911 |||||||| || ||||| | ||||||||||||| || ||| |||||||| ||||||| Sbjct 132933 TGGGCGTCTGTCAGGCGGGCGTAGCGCAGGATGGCGCAGCGGGACTGCAGGGGCTCGATG 132874 Query 332912 ACCATTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATG 332971 | | | ||| |||||| || | ||| || || || || | | | | |||||| Sbjct 132873 ATCTTGTTGGACTGGTTGCACGCGAAGGCGAAGCGGGTGGTTGCGCTGTAGATCTCCATG 132814 Query 332972 GTCGACCGGAGGGCCTGTTGGGCCGCCGGCG-TGAGGCAGTCGGCCTCGTCGAGGATGAT 333030 || ||||||||||| ||||| |||| | | | || |||||||||||||||||||| Sbjct 132813 GTGCGGCGGAGGGCCTGCTGGGC-GCCGCTGGTCATGCTGTCGGCCTCGTCGAGGATGAC 132755 Query 333031 GATCTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTT 333090 || ||| ||||| || | || || || ||||| |||| | |||||| || Sbjct 132754 GAGCTTCTGGCGGCCCGGGGGGAGGGTGACTTTTTTCTGGGCGAAGCCTTTGATTCGGTT 132695 Query 333091 GCGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGC 333150 |||||||||||| | ||||||||||||||| |||||||| || |||||||| || | | Sbjct 132694 GCGCACGACGTCGATGCCGCGCTCGTCCGAGGCGTTGAGCTCCAGCACGGCTTCCTTGTA 132635 Query 333151 GGCCGCACCCAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGG 333210 ||| | || | ||| |||||| ||||| |||| ||||| ||||| |||| || Sbjct 132634 GGCGTCGCCGAGGAGCTGGCGCGCGAGGCAGAGGATGGAGGTGGTTTTGCCGATGCCAGG 132575 Query 333211 C 333211 | Sbjct 132574 C 132574 >seq19 Length=853957 Score = 163 bits (180), Expect = 4e-34 Identities = 211/288 (73%), Gaps = 5/288 (2%) Strand=Plus/Minus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||| |||||||| || ||||||||||| || || |||||||| || ||| |||| ||| Sbjct 676546 TGGCAAATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAAGAGATCGATCTCTC 676488 Query 1455839 CGCCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 | |||| | ||||| || | | |||||||||||| |||||| || Sbjct 676487 CAAGGACATCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGTTTCTTCATCTCCCA 676428 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 |||||||||||| || ||| ||| ||||||||| || ||||||||| | || |||| Sbjct 676427 CGTCCTCGCCTTCTT-CGCTGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAGCGCT 676369 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | || ||||| || | || |||||||| | || ||||| ||||||||| || | Sbjct 676368 TCTCGAGCGAGGTACAGATCCCTGAGGCACGATGCTTCTACGGCTTCCAGATCATGATGG 676309 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCA 1456063 | ||| ||||| |||| || ||||| ||||| |||||||||||| ||| Sbjct 676308 AGAACGTCCACGCTGAGACATACTCTCTCCTCATCGACACCTACATCA 676261 Score = 111 bits (122), Expect = 2e-18 Identities = 182/255 (71%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTT--TGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||| |||||||||| |||||| | ||||| |||| | | | || || | Sbjct 675890 ATCATCACCGAGGCCGTCACAATCGAGCAGGAGTTCCTGTCTG--ACGCCCTCCCTTGTG 675833 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 |||| |||||||||||||| | ||||||||||||||||| || || ||||| || || Sbjct 675832 CGCTGCTCGGCATGAACGCCGGC-CTCATGTGCCAGTACATCGAGTTC-GTCGCTGATCG 675775 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 ||| || ||| || ||| | ||||||||| | ||||||| ||| | | Sbjct 675774 CCTACTGTTGGCTCTTGGCAACCCC-AAGCACTACAACGCTACCAACCCCTTCGACTTCA 675716 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACG 1456759 ||||| |||||||| | |||||||||||||| |||||| |||| ||| || ||| Sbjct 675715 TGGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACTACC 675656 Query 1456760 CCAAGGCCGGCGTCA 1456774 ||||| || |||| Sbjct 675655 AGAAGGCTGGTGTCA 675641 >seq3 Length=2655511 Score = 111 bits (122), Expect = 2e-18 Identities = 294/449 (65%), Gaps = 22/449 (5%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| ||||||| || || |||||| |||||| || ||||||||||| ||| || Sbjct 1394171 GGTGGCAACAAGCGCCCTGGTGCATTTGCCATCTACCTCGAGCCGTGGCACGCTGACGTC 1394230 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || || || ||||| | |||||||||||||| ||||| || | || ||| Sbjct 1394231 TTCGGCTTCCTCGACCTGAGGAAGAACCACGGCAA-GGAGGAGG-----TTCGTGCTCGC 1394284 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCG---CATGGTGACCGGC 261964 |||||||| |||| ||||||| ||| || ||||||| || | || || || Sbjct 1394285 GATCTCTTCTACGCTCTGTGGATTCCCGATCTCTTTATGCAGCGTGTCCAGGAGAACG-- 1394342 Query 261965 CGCGACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCG 262024 |||| ||| | ||| | ||||| |||| |||||||| || || |||| Sbjct 1394343 -GCGAGTGGACTCTCATGTGCCCCAACGAGTGCCCCGGCCTCGCTGACGTTTACGGCGAT 1394401 Query 262025 GCCTTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCG---GACCGT-CGT 262080 | || | ||||| || ||| || ||| || ||| Sbjct 1394402 GAGTTCGTTGCCCTTTACGAGAAGTACGAGAAGCTTGGTAAGGGTCGTGAGACTGTCCGT 1394461 Query 262081 GCCCGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTA 262140 || | | || |||||| |||||| | | ||| || | |||||| || | |||| Sbjct 1394462 GCTCAGA----AGCTCTGGTACGCCATTCTTGAGGCTCAGACCGAGACTGGTAACCCCTT 1394517 Query 262141 CATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGA 262199 |||| |||||||||| || | |||| || ||||||||| ||||||| || |||| | Sbjct 1394518 CATGCTCTACAAGGATGCTGCCAACAGGAAGAGCAACCAGAAGAACCTCGGTACCATCCG 1394577 Query 262200 CAGAGGCCAACCTGTGCACCGAGATCGTC 262228 ||| ||||||| ||||| |||||| || Sbjct 1394578 CAG-CTCCAACCTCTGCACTGAGATCATC 1394605 >seq14 Length=954076 Score = 87.8 bits (96), Expect = 3e-11 Identities = 119/165 (72%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 || ||||||||||| |||||| || | | ||| |||||| ||||||| ||| Sbjct 763577 GTCCTCAAGCAGGTCCACCCCGACACTGGT-----ATC-TCCAACCGCGCCATGTCCATC 763630 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 |||||||||| ||||||||||| |||| ||| ||| |||||||||| || || Sbjct 763631 CTGAACTCGTTCGTCAACGACATCTTCGAGCGCGTCGCCACCGAGGCCTCCAAGCTCGCT 763690 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || ||||||| ||| ||| | |||| |||||||||||| Sbjct 763691 GCCTACAACAAGAAGTCCACCATCTCCTCGCGTGAGATCCAGACC 763735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177789305432774