Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 seq2 87.8 2e-12 >seq1 Length=4966325 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||||| | || ||| |||| |||||||||||||||||||| Sbjct 2851208 CTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGCCCGTCTTCCAGCTGCTTACCCGCAAA 2851267 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | | |||||| ||| |||||| ||| | || Sbjct 2851268 GATAAGACGCTGCTGGTCAGGTGGGATACCCTCCTTATCCTGGATCTTAGACTTGA-CGT 2851326 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||||||| || || ||||||| ||||| || || || || | || || | Sbjct 2851327 TGTCGATCGTGTCGCTAGACTCAACCTCCAATGTGATGGTCTTGCCGGTGAGTGTCTTGA 2851386 Query 35724 CAAATATCTGCAT 35736 | || || ||||| Sbjct 2851387 CGAAGATTTGCAT 2851399 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | ||| |||||| || |||||||| || | Sbjct 2851401 CCACCACGAAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 2851460 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| |||| |||||| || || || || | ||||||||||||| ||| Sbjct 2851461 AGTGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 2851520 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||||||| ||||| ||| | |||| | | |||||| ||| || || Sbjct 2851521 ATACCCTCCTTGTCCTGAATCTTCGACTTTA-CGTTGTCGATCGTGTCCGACGACTCAAC 2851579 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| |||||| || || || |||| || || || || |||||||| Sbjct 2851580 CTCCAGCGTGATAGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 2851627 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||||| | || || | || || |||||||| || || || Sbjct 2851947 CTCCTTCTGGATGTTGTAATCGGATAGAGTACGTCCATCCTCAAGCTGCTTGCCAGCGAA 2852006 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | ||||| || ||||||||| |||||| ||| | || Sbjct 2852007 GATCAAGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGCTCTTGA-CGT 2852065 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 || | | || || || |||||||| | |||||||| ||||| || Sbjct 2852066 TGTCGATGGTATCTGAAGACTCCACCTCAAGGGTGATCGTCTTACCGGT 2852114 >seq2 Length=3786261 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | || || |||| || |||||||| || || || Sbjct 2400699 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2400640 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 |||| ||||||||||||| |||| || |||||||||| |||||| Sbjct 2400639 GATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 2400592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450792320873160