Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3 104 3e-17 seq19 86.0 9e-12 >seq3 Length=2655511 Score = 104 bits (114), Expect = 3e-17 Identities = 391/611 (64%), Gaps = 2/611 (0%) Strand=Plus/Minus Query 69518 CGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACC 69577 |||| ||||| || |||| ||| | | || || || || || || ||||| | | || Sbjct 1394408 CGAACTCATCGCCGTAAACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGAGTCC 1394349 Query 69578 ACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGA 69637 || | | | |||| || || | |||||| |||||||||||||| ||||| |||| Sbjct 1394348 ACTCGCCGTTCTCCTGGACACGCTGCATAAAGAGATCGGGAATCCACAGAGCGTAGAAGA 1394289 Query 69638 GATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAA 69697 |||| | | | | || || || || || || | || ||||| || | | | Sbjct 1394288 GATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCCGAAGA 1394229 Query 69698 TATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCT 69757 |||| ||||| || || || || || || | | || || || || || || |||| Sbjct 1394228 CGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAATGCACCAGGGCGCTTGTTGCCACCCT 1394169 Query 69758 GATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATT 69817 | || | || | ||||||||| || || || | ||||| ||||| | ||| || ||| Sbjct 1394168 GGTCGACATAGCGGGCAGTGTTGTTGTAAACACGGAGCATGGGAATCAGACCGTTCGATG 1394109 Query 69818 TACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTA 69877 | || || ||||| ||||| || | || ||||| | || || | Sbjct 1394108 TTCCGTTGGTTCCTCCGATATAGGAGCCAGTGGCACGAATGCGGTGGACGTTGAGGCCAA 1394049 Query 69878 TTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTA 69937 | || || || | || ||||| | || || || | |||||| || |||||||| | Sbjct 1394048 TACCGCCAGCAGTCTTGGAGATCAACGCGCATGTCTTGAGTGTGTCGTAGATACCCTCAA 1393989 Query 69938 TGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCG 69997 |||| || || |||||| | || || ||| ||||| || | || || | Sbjct 1393988 TGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGTGGGGACGGTGTACCAG 1393929 Query 69998 CATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA-AAGCAGATTGTATGTT 70056 | || || | || || || ||||| ||||| | || | || | | || | |||||| Sbjct 1393928 CGTTGAAGAGCGTCGGCGACGCGTGTGTGAAGTACTTCTGCGACATGTAG-TCGTATGTC 1393870 Query 70057 TCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGC 70116 || ||||| || || ||| | || || || | ||||||||||| | ||| ||| Sbjct 1393869 TCGATAGCCTTCTCGATGTCCTCCATGTGGATGCCAACAGCGACACGCATGAGCATGTGC 1393810 Query 70117 TGAGGTCGTTC 70127 || || || || Sbjct 1393809 TGGGGGCGCTC 1393799 >seq19 Length=853957 Score = 86.0 bits (94), Expect = 9e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || ||||| || | |||||| || | | || | ||||| || |||||||| Sbjct 675942 GCAAGCAAAGTCTGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTGAG 676001 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| ||||||||||| || ||||| || |||| || || || ||| ||||| Sbjct 676002 ACCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGACGCGAACGAACCACTGAAGAA 676061 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAG 39765 ||| ||||| || || || || ||||| || Sbjct 676062 GATACCTTCAACGGCGGCGAAAGCAACGAG 676091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906850896280