Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq19 87.8 6e-12 seq3 86.0 2e-11 >seq19 Length=853957 Score = 87.8 bits (96), Expect = 6e-12 Identities = 122/170 (72%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 443700 TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTT 443759 |||| | | || || || ||||| || | || ||||| | || || || || | || Sbjct 676103 TTCGCCAACCGTCTCGTTGCTTTCGCCGCCGTTGAAGGTATCTTCTTCAGTGGTT-CGTT 676045 Query 443760 AGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGA 443819 || |||||||||||| |||| |||||||| || |||| |||||| || || ||||| Sbjct 676044 CGCGTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTCACATTCTCCAACGA 675985 Query 443820 ACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCT 443869 || ||| ||| |||||||| |||| ||||| || || ||||||| Sbjct 675984 GCTCATCTCTCGTGACGAGGGCATGCACACAGACTTTGCTTGCCTTCTCT 675935 >seq3 Length=2655511 Score = 86.0 bits (94), Expect = 2e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 254978 ATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAA 255037 || || ||| ||||||| | ||||||| || ||||| ||||| || || ||| ||| Sbjct 1394123 ATTCCCATGCTCCGTGTTTACAACAACACTGCCCGCTATGTCGACCAGGGTGGCAACAAG 1394182 Query 255038 CGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGAC 255082 ||||| || || || |||||||||| |||||||||||||| ||| Sbjct 1394183 CGCCCTGGTGCATTTGCCATCTACCTCGAGCCGTGGCACGCTGAC 1394227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588331380424015