Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 206 3e-48 >seq3 Length=2655511 Score = 206 bits (228), Expect = 3e-48 Identities = 572/864 (66%), Gaps = 15/864 (2%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 ||||| |||| || |||| ||||| ||||| ||||||| | ||||| || | Sbjct 1394661 GGAAGAGCGACGGAAGCCAGGTTGCAGACAGCGACCTCATCCGGTGCAGTGTATTCGATG 1394602 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | |||||| || || || || | ||||| ||||| |||||| || Sbjct 1394601 ATCTCAGTGCAGAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTG 1394542 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||| |||||||||||||||||| |||| | || ||||| ||||| | | ||||| Sbjct 1394541 TTGGCAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATG 1394482 Query 111410 GCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTC-CGCCTCGTACT 111467 || | ||| | | || | | || ||| | | | ||| | || | |||||||| Sbjct 1394481 GCGTACCAGAGCTTCTGAGCACGG-ACAGTCTCAC-GACCCTTACCAAGCTTCTCGTACT 1394424 Query 111468 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTG 111527 | ||| ||||| | ||||| || || |||| | ||| || || || || | Sbjct 1394423 TCTCGTAAAGGGCAACGAACTCATCGCCGTAAACGTCAGCGAGGCCGGGGCACTCGTTGG 1394364 Query 111528 GACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587 | || | |||| ||| | || |||| || |||| ||| || || || ||||||| Sbjct 1394363 GGCACATGAGAGTCCACTCGCCGTTCTCCTGGACACGCTGCATAAAGAGATCGGGAATCC 1394304 Query 111588 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 111647 |||| | | |||||||| | | ||| |||| || | || ||||| | | | Sbjct 1394303 ACAGAGCGTAGAAGAGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGT 1394244 Query 111648 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----C 111703 | ||||| | | || || |||||||| ||||| || |||| || | | || | Sbjct 1394243 CGAGGAAGCCGAAGACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAATGCACCAGGGC 1394184 Query 111704 TTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 111763 | | ||| | | || | |||||||| || ||| ||| | || || ||||| ||| Sbjct 1394183 GCTTGTTGCC-ACCCTGGTCGACATAGCGGGCAGTGTTGTTGTAAACACGGAGCATGGGA 1394125 Query 111764 ATAATACCATCTGATTGACCATTTGTCCC-CCGA-ATACGAGATTTATTGGCTCTCACAT 111821 || | ||| | ||| || || || || |||| ||| ||| | |||| | | Sbjct 1394124 ATCAGACCGTTCGATGTTCCGTTGGTTCCTCCGATATAGGAGCC--AGTGGCACGAATGC 1394067 Query 111822 CATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAG 111881 |||| || | |||||||| ||||| ||| ||||| ||| || | | || | Sbjct 1394066 GGTGGACGTTGAGGCCAATACCGCCAGCAGTCTTGGAGATCAACGCGCATGTCTTGAGTG 1394007 Query 111882 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 111941 | | |||||||| | || ||| ||||| || |||| |||||||| ||||||| Sbjct 1394006 TGTCGTAGATACCCTCAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGATGACATCT 1393947 Query 111942 GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGG 112000 | || ||||||||||| |||||||| || || | ||||| |||| ||| | || Sbjct 1393946 GTGGGGACGGTGTACCAGCGTTGAAGAGCGTCGGCGACGCGTGTGTGAAG-TACTTCTGC 1393888 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 ||||| | |||||||||||| | | || ||||| ||| ||||||||| | ||| Sbjct 1393887 GACATGTAGTCGTATGTCTCGATAGCCTTCTCGATGTCCTCCATGTGGATGCCAACAGCG 1393828 Query 112061 ACCCGCATGAACATGTACTGTGGG 112084 || ||||||| ||||| ||| ||| Sbjct 1393827 ACACGCATGAGCATGTGCTGGGGG 1393804 Score = 84.2 bits (92), Expect = 3e-11 Identities = 277/431 (64%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 110354 GCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGC 110413 ||| | | |||||| |||||||| ||||||||||| || | |||||| | | ||| Sbjct 1395537 GCCATGGTTCGGAGGTAGTACATTCCGGTCTTGAGGCCAAGCTTCCATCCAGCGAAGTGC 1395478 Query 110414 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGG 110473 || || | || |||| ||| || || | |||| || ||||| | ||| || Sbjct 1395477 ATGGATGTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTCAGAGACTGAGACTGA 1395418 Query 110474 TCAATGAAGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAA 110533 || |||||| || || | || ||||| | |||| | | |||||||| Sbjct 1395417 TCGATGAAGGCACCACGGTCAGCAGCCATCTGGATGATGGTACGCTGCGAGATTTCCCAG 1395358 Query 110534 ACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCC 110593 || || |||||| |||||| || || || || | | ||| ||||||||| || Sbjct 1395357 ACAGTCTTGTAGAGAACCTTGATCTCGTCAGGAATGTTAGGGATGCGCTGGATGGATCCA 1395298 Query 110594 CCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCA 110653 ||| | | ||| | | |||||| | || || ||||||||| || | ||||| Sbjct 1395297 CCCTCGGCAATGATGCGGTTCTTCATGTTCTCGGTCCAGAGACCCATGTCGACAAGGTCC 1395238 Query 110654 TTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATG 110713 |||| | |||||||| ||||| || ||||| | | ||| ||| Sbjct 1395237 TTGAGCAACCAAGGGTTGACAACCTGGAACTCTCCAGCGAGCACACGACGAGAGTAAATG 1395178 Query 110714 TTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTT 110773 || | ||||| || || ||||| || || || || | || || | ||| |||||||| Sbjct 1395177 TTCGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTAGAGGCTGTA 1395118 Query 110774 GGCATTGGTGC 110784 ||||| || || Sbjct 1395117 GGCATAGGCGC 1395107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030217959200