Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 228 1e-54 seq19 125 9e-24 >seq3 Length=2655511 Score = 228 bits (252), Expect = 1e-54 Identities = 1120/1754 (64%), Gaps = 45/1754 (3%) Strand=Plus/Minus Query 117828 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 117887 ||| | | ||||||||||||||| || |||||||| || ||||||| || | ||| Sbjct 1395537 GCCATGGTTCGGAGGTAGTACATTCCGGTCTTGAGGCCAAGCTTCCATCCAGCGAAGTGC 1395478 Query 117888 ATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 117947 || || | | |||| | || || | |||| || ||||| | || || ||| Sbjct 1395477 ATGGATGTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTCAGAGACTGAGACTGA 1395418 Query 117948 TCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCAC 118007 ||||||||| || || || || ||||| | || | | | ||||||||| Sbjct 1395417 TCGATGAAGGCACCACGGTCAGCAGCCATCTGGATGATGGTACGCTGCGAGATTTCCCAG 1395358 Query 118008 ACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCA 118067 |||||| ||||||| ||| || || || || || | ||| |||||||||||| Sbjct 1395357 ACAGTCTTGTAGAGAACCTTGATCTCGTCAGGAATGTTAGGGATGCGCTGGATGGATCCA 1395298 Query 118068 CCCGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCC 118127 ||| | | ||| | | |||||| | || | ||||||||| || | || ||| Sbjct 1395297 CCCTCGGCAATGATGCGGTTCTTCATGTTCTCGGTCCAGAGACCCATGTCGACAAGGTCC 1395238 Query 118128 TCCACGAGATGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TA 118183 | ||| | | |||||||| ||||| || ||||| || | ||| || Sbjct 1395237 TT---GAGCAACCAAGGGTTGACAACCTGGAACTCTCCAGCGAGCACACGACG-AGAGTA 1395182 Query 118184 GATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGC 118243 || || | ||||| ||||| |||||||| ||||| || | || || | || ||||| Sbjct 1395181 AATGTTCGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTAGAGGC 1395122 Query 118244 TGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTT 118303 ||| ||||| || || | ||| || || |||| ||| | | ||| ||||| Sbjct 1395121 TGTAGGCATAGGCGCAACGAGCAGAGAATTGCGGACACCGTACTGTGCAATCTTCTCCTT 1395062 Query 118304 GAGAGCGTCCCAGTCGTAGTTG--AGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 118361 || | | ||||||| || | || | || | | | |||||| || |||| || Sbjct 1395061 CAGCGAGGCCCAGTCCCAGAGGTCAG-TGGGTGTGACGCC-CCACATGTCGTACTGAAGC 1395004 Query 118362 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC---GCC 118418 || || || | || || ||||| | || ||| ||||| || |||| ||| Sbjct 1395003 TGGCCCTGCGAGACAGGGGAGCCCTCGTACGTAGTATAGGGGCC---AAACTCCTTAGCC 1394947 Query 118419 AATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATT 118478 ||| | | | ||| ||||| || || || || || || | | || | | Sbjct 1394946 GTCTCGCAAGAAGAGGTCAAGGCGGCGTGGTAGATAGTCTCGAAGATCTGGGTGTTGAGT 1394887 Query 118479 GCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCT 118538 ||| ||||| || || || | || || | || | || || ||||| Sbjct 1394886 TTCTTAGCCTCAGGCGACTCGAAGGGCAGGCGAAGAGCGAGGAAAGCGTCAGCAAGACCC 1394827 Query 118539 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTC--CGAGCGGTCTCCACGG 118596 |||||||| || ||||| || | || | | || || | || || ||| || | Sbjct 1394826 TGGACACCAAGACCAATAGGCCTGTGACGGAAGTTG--CTGCGGCGTGCCTCCTCAACTG 1394769 Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 118656 | || ||| ||||| | | | || || || ||| |||| || || | Sbjct 1394768 GGTAGTGATTGACCTCGATGATCTTGTTGAGGTTGCGTGTGCAGACCTGGACGACCTCGT 1394709 Query 118657 GAAGCTTTTCGTAATCAAAA-CTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 118715 ||||||| | | |||| || || || | || | || ||| | ||||| |||| Sbjct 1394708 GAAGCTTCTTGAAATCGAACTCTCCGCG-CTTGTAATCGACGAAAGAGGGAAGAGCGACG 1394650 Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 || ||||| || || |||| | ||||||| ||||||| || || || || ||||| Sbjct 1394649 GAAGCCAGGTTGCAGACAGCGACCTCATCCGGTGCAGTGTATTCGATGATCTCAGTGCAG 1394590 Query 118776 AAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 118835 | ||| || || ||||| || | |||||| || || ||| |||| |||||| Sbjct 1394589 AGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATCC 1394530 Query 118836 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-C 118894 ||||| |||||| | || | || ||||| || || | || ||||| || | ||||| | Sbjct 1394529 TTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATGGCGTACCAGAGC 1394470 Query 118895 ATCGGCAGCTGGCACAGTGGCGTTGGC-TCGCCCCTCTTCCTCGTACTTTGTGTAGAGGG 118953 || | ||| | ||||| | | | || |||| |||||||| ||| |||| Sbjct 1394469 TTCTG-AGCACGGACAGTCTCACGACCCTTACCAAGCTTC-TCGTACTTCTCGTAAAGGG 1394412 Query 118954 CTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAG 119013 | | ||||| || || | || | ||| || || || | ||||| | ||||| Sbjct 1394411 CAACGAACTCATCGCCGTAAACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGAG 1394352 Query 119014 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGA 119073 ||| | || ||||| || |||| ||| ||||| || || ||||| || || ||| Sbjct 1394351 TCCACTCGCCGTTCTCCTGGACACGCTGCATAAAGAGATCGGGAATCCACAGAGCGTAGA 1394292 Query 119074 AGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 119133 ||||||| ||| ||| | || || | || || || | || || | ||| | | Sbjct 1394291 AGAGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCCGA 1394232 Query 119134 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA------C 119187 || || ||||||||||| || ||||| | || | || || | | || | Sbjct 1394231 AGACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAATGCACC---AGGGCGCTTGTTGC 1394175 Query 119188 CAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCAT 119247 || |||||| ||||| | |||||| ||| | ||||| ||||| ||||| | ||| | Sbjct 1394174 CACCCTGGTCGACATAGCGGGCAGTGTTGTTGTAAACACGGAGCATGGGAATCAGACCGT 1394115 Query 119248 CGGATTGGCCATTTGTCCC-CCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTG 119305 ||| || || || || |||| ||| ||| | | |||| | | ||||| || Sbjct 1394114 TCGATGTTCCGTTGGTTCCTCCGATATAGGAGCC--AGTGGCACGAATGCGGTGGACGTT 1394057 Query 119306 CATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGAT 119365 | |||||||| || || ||| ||||| |||||| | |||| || ||||||| Sbjct 1394056 GAGGCCAATACCGCCAGCAGTCTTGGAGATCAACGCGCATGTCTTGAGTGTGTCGTAGAT 1393997 Query 119366 CCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGG 119425 || || || ||| |||| | |||||||||||||| ||||| || || || Sbjct 1393996 ACCCTCAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGTGGGGACGG 1393937 Query 119426 TGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGT 119484 |||||||||||||||||| || || | |||||| |||| ||| | || ||||| | || Sbjct 1393936 TGTACCAGCGTTGAAGAGCGTCGGCGACGCGTGTGTGAA-GTACTTCTGCGACATGTAGT 1393878 Query 119485 CGTAGGTCTCCA-AGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATA 119543 |||| ||||| | || | | | ||||| ||| ||| || || | | ||| ||||| Sbjct 1393877 CGTATGTCTCGATAGCCTTCTCG-ATGTCCTCCATGTGGATGCCAACAGCGACACGCATG 1393819 Query 119544 AACATGTATTGGGG 119557 | ||||| ||||| Sbjct 1393818 AGCATGTGCTGGGG 1393805 >seq19 Length=853957 Score = 125 bits (138), Expect = 9e-24 Identities = 297/443 (67%), Gaps = 12/443 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT-GATATTCTCCAT 129786 ||||| ||||| ||||||||||||||||| ||||| || | |||| ||| |||||||| Sbjct 675658 TAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCAGC-AAGCGAGATGTTCTCCAT 675716 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT--CCAATCTGTTTGAGGAGA 129844 || || || ||||| | | ||| | |||| | | |||| || || Sbjct 675717 GAAGTCGAAGGGGTTGGTAGCGTTGTAG--TGCTTGGGGTTGCCAAGAGCCAACAGTAGG 675774 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 ||||| | |||| |||| ||||||| |||| ||| |||||| |||| || | Sbjct 675775 CGATCAGCGACGAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAGCAGCGCA 675834 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 || ||||| ||||| | | |||| ||| ||| || || || || | ||| || Sbjct 675835 CAAGGGAGGGCGTCAGACAGGAACTCCTGCTCGATTGTGACGGCCTCGGTGATGATAGCT 675894 Query 129965 TGAATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAAC 130021 | | ||| ||| || | |||| ||| || |||||| ||||| Sbjct 675895 GCGACAGCCTCTTTGCTTGGGCGGTTATTCAGCAGAGA---GAAGAGAAGGCAAGCAAAG 675951 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| | ||||||||||| |||||||| || || ||||| ||||| |||||| Sbjct 675952 TCTGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTGAGACCGGGCATG 676011 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 ||||| |||||||||| |||||| || | || || ||| ||||||||| || || Sbjct 676012 AGACCACGCTTCTTCAGCCAGAAGATGGACGCGAACGAACCACTGAAGAAGATACCTTCA 676071 Query 130142 ACACACGCGAACGCAAAGAGACG 130164 || ||||| |||| |||||| Sbjct 676072 ACGGCGGCGAAAGCAACGAGACG 676094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433445190120