Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 159 1e-33 seq12 109 2e-18 seq2 86.0 2e-11 >seq1 Length=4966325 Score = 159 bits (176), Expect = 1e-33 Identities = 431/654 (66%), Gaps = 13/654 (2%) Strand=Plus/Plus Query 349251 ATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTG 349310 |||| || | || || || ||||| || || |||||||| ||||| || || | ||||| Sbjct 2690747 ATGACCGCATTGAGATTATCGCAAACGACCAGGGTAACAGGACAACACCGTCCTTCGTTG 2690806 Query 349311 CATTTACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATC 349370 | || ||||| || |||||| | ||||| || || ||||| || || | || || | Sbjct 2690807 CCTTCACCGACACCGAGCGTCTCATTGGCGACTCCGCAAAGAACCAGGTCGCCATGAACC 2690866 Query 349371 CAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGAC----AA 349425 | | || || || || || || ||||| || || ||| | ||||| | ||| | Sbjct 2690867 CTATCAACACAGTCTTCGACGCCAAGCGCCTCATCGGTCGCAAGTTCAAC-GACGCCGAG 2690925 Query 349426 ATCTACACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAA 349485 || || | ||| | || || || || || | || || | ||| |||| || Sbjct 2690926 GTC----CAGGCCGATATGAAGCACTTCCCCTTCAAGGTCATTG-ACAAG--GGTGGCAA 2690978 Query 349486 ACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTC 349545 || | | |||| || | || ||||| | || || |||||| || || || Sbjct 2690979 GCCTGTCGTCCAGGTCGAGTTCAAGGGTGAGGAGAAGACCTTCACACCCGAGGAGATCTC 2691038 Query 349546 ATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAAC 349605 || ||| | | || || |||| ||| | |||||| | || | |||| ||| || | Sbjct 2691039 TTCCATGATCCTCGTCAAGATGAGGGAGACTGCTGAGTCCTACCTGGGTGGAACCGTCAA 2691098 Query 349606 TGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGA 349665 | || || | || || || ||||| || || || | || ||| || || || || Sbjct 2691099 CAACGCCGTCGTCACAGTTCCTGCCTACTTCAACGACTCGCAACGTCAGGCTACTAAGGA 2691158 Query 349666 TGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGC 349725 |||||| |||||| || | || || || | || || || || ||||||||||| || Sbjct 2691159 TGCTGGTCTCATTGCCGGCCTTAACGTCCTCCGTATCATCAACGAGCCCACTGCTGCTGC 2691218 Query 349726 AATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTT 349785 ||||| || || ||||| || | || || || || | || || || || || Sbjct 2691219 TATTGCCTACGGTCTTGACAAGAAGACCGAGGGTGAGCGCAACGTCCTCATCTTCGACTT 2691278 Query 349786 AGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAA 349845 || |||||||| || ||||| || || | || | |||||||| || ||||| || || Sbjct 2691279 GGGAGGTGGTACATTCGATGTTTCCCTCTTGACCATCGAAGAGGGTATCTTTGAGGTCAA 2691338 Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 | || || |||||||| || | ||||| ||||| || || || |||||||| Sbjct 2691339 GTCCACCGCCGGTGATACTCACTTGGGTGGTGAAGACTTCGACAACCGTCTCGT 2691392 Score = 131 bits (144), Expect = 5e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || || |||||||| || || || || ||||| Sbjct 2851908 CATACCACCACGAAGGCGGAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATC 2851967 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 |||| || || ||||| ||||| || || ||||| ||||| | || ||||| ||||| Sbjct 2851968 GGATAGAGTACGTCCATCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGG 2852027 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||| ||||| || ||||| || || ||| || || || || || | ||| || | | Sbjct 2852028 AGGAATGCCTTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATGGTATCTGAAGACT 2852086 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 | || ||||| || | ||||| ||||| | ||| Sbjct 2852087 CCACCTCAAGGGTGATCGTCTTACCGGTGACTGT 2852120 Score = 113 bits (124), Expect = 1e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || || || ||||| || || || || | Sbjct 2851393 TTTGCATACCACCACGAAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGT 2851452 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | ||| || || || || | || || || || ||||| ||||| ||||| | Sbjct 2851453 AGTCCGAAAGTGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGACGCTGCTGGT 2851512 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || || || || |||||||| || | ||||| || || |||| || || | Sbjct 2851513 CCGGAGGGATACCCTCCTTGTCCTGAATCTTCGACTTTACGTTGTCGATCGTGTCCGACG 2851572 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || | ||||| || || || || || || || |||||||| Sbjct 2851573 ACTCAACCTCCAGCGTGATAGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 2851627 >seq12 Length=1018440 Score = 109 bits (120), Expect = 2e-18 Identities = 248/368 (67%), Gaps = 10/368 (3%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGA-AGCATATTT 349590 |||||||| || || | |||||| | | || |||||||| | ||||| ||| || | Sbjct 445326 CCCGAAGAGATCTCCGCTATGGTTCTTGGCAAGATGAAGGAGGTCGCTGAGAGC-TACCT 445384 Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650 || || || | | || ||| |||| || || ||||| || || || || ||||| Sbjct 445385 TGGCGAGGAGGTTAAGAACGCCGTTGTTACCGTTCCTGCCTACTTCAACGACGCTCAGCG 445444 Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710 |||| || || || || || | || || || | || ||||| | | | || || Sbjct 445445 CGCTGCCACTAAGGACGCCGGAACTATCGCCGGTCTTAACGTTCTCCGTGTTGTCAACGA 445504 Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaa---- 349766 ||||| || || || |||| || || ||||| || | |||||| ||| | Sbjct 445505 GCCCACGGCCGCCGCTCTTGCCTACGGTCTTGACAA---GTCTGACCA-GAAGGAGCGCC 445560 Query 349767 aTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAG 349826 | ||||| | | ||| | |||||||||||||| ||||| || | || || |||| | Sbjct 445561 AGGTTCTTGTCTACGATCTTGGTGGTGGTACTTTCGATGTCTCTATCCTCACCATTGAGG 445620 Query 349827 AGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTG 349886 | || |||| || || | | || |||||||| || || |||||||| || ||||| | Sbjct 445621 ACGGCGTTTTCGAGGTCCAGTCTACCGCTGGTGACACTCACCTTGGTGGTGAGGATTTCG 445680 Query 349887 ATAATCGT 349894 |||| ||| Sbjct 445681 ATAACCGT 445688 >seq2 Length=3786261 Score = 86.0 bits (94), Expect = 2e-11 Identities = 95/126 (75%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || |||||||| ||||||| ||| ||||| | |||||| || || ||||| || || Sbjct 285836 CGGGGCACACCGAGTGTAACGTTC---TTAGAGGAAACACCGGCGAAATGGAACGTGTTG 285892 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||||| | ||||||||||| ||||| || || | ||| || ||||| || Sbjct 285893 AGCGTCATCTGAGTCGCAGGCTCACCAATGGACTGAGCAGCCAGAACACCGACCATCTCA 285952 Query 377578 CCAGGA 377583 |||||| Sbjct 285953 CCAGGA 285958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515249992977281