Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 228 9e-55 seq1 105 7e-18 >seq3 Length=2655511 Score = 228 bits (252), Expect = 9e-55 Identities = 383/545 (70%), Gaps = 12/545 (2%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||| ||||||| ||| || |||||||| || ||||| |||| || || |||||| Sbjct 1393868 GAGACATACGACTACATGTCGCAGAAGTACTTCACACACGCGTCGCCGACGCTCTTCAAC 1393927 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 |||||||| ||| |||||||| ||||||||| | | |||||||| ||| Sbjct 1393928 GCTGGTACACCGTCCCCACAGATGTCATCCTGCTTCCTCATCGACATGAAGGAAGACAGC 1393987 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || || || |||||||| || |||||| || || ||||||||| | || ||| Sbjct 1393988 ATTGAGGGTATCTACGACACACTCAAGACATGCGCGTTGATCTCCAAGACTGCTGGCGGT 1394047 Query 53423 ATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 || || || || || | || | ||||| | ||| | ||| || || |||| Sbjct 1394048 ATTGGCCTCAACG--TCCACCGCATTCGTGCCACTGGCTCCTATATCGGAGGAACCAACG 1394105 Query 53481 G--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGT 53538 | | ||| | || | | || |||||||| || | ||||||||| ||||| || || Sbjct 1394106 GAACATCGA--ACGGTCTGATTCCCATGCTCCGTGTTTACAACAACACTGCCCGCTATGT 1394163 Query 53539 CAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGC 53598 | |||||||||| |||||| || | || |||||||||||||||||||||||||| Sbjct 1394164 CGACCAGGGTGGCAACAAGCGCCCTGGTGCATTTGCCATCTACCTCGAGCCGTGGCACGC 1394223 Query 53599 CGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-C 53657 ||| | | | || ||||| ||| | ||| || || | || ||| | || ||| | Sbjct 1394224 TGACGTCTTCGGCTTCCTCGACCTGAGGAAGAACCACGGCAAGGAGGAGGTTCG-TGCTC 1394282 Query 53658 GTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGAC 53716 | || || || ||| |||||||||||||| || ||||| ||||| || || || || Sbjct 1394283 GCGATCTCTTCTAC-GCTCTGTGGATTCCCGATCTCTTTATGCAGCGTGTCCAGGAGAAC 1394341 Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAG 53776 | |||||| || |||||||| |||||||||||||||||| | || ||||| || Sbjct 1394342 GGCGAGTGGACTCTCATGTGCCCCAACGAGTGCCCCGGCCTCGCTGACGTTTACGGCGAT 1394401 Query 53777 GAGTT 53781 ||||| Sbjct 1394402 GAGTT 1394406 Score = 104 bits (114), Expect = 3e-17 Identities = 294/446 (66%), Gaps = 7/446 (2%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 ||||| || |||||||| ||||| ||||| || || || || | ||||| | |||||| Sbjct 1395089 CGCAATTCTCTGCTCGTTGCGCCTATGCCTACAGCCTCTACCTCGCAGATTCTTGGCAAC 1395148 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| | ||||| ||| || || || || || ||| Sbjct 1395149 AACGAGTGCTTCGAGCCCTACACCTCGAACATTTACTCTCGTCGTGTGCTCGCTGGAGAG 1395208 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || | ||||| | |||||||||| | || |||| | | Sbjct 1395209 TTCCAGGTTGTCAACCCTTGGTTGCTCAAGGACCTTGTCGACATGGGTCTCTGGACCGAG 1395268 Query 55664 CAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGA--ATCTGGAG-ATTC 55718 | || |||| || || | ||| || || || ||| ||||| ||| | |||| Sbjct 1395269 AACATGAAGAACCGCATCAT-TGCCGAG-GGTGGATCCATCCAGCGCATCCCTAACATTC 1395326 Query 55719 CTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTG 55778 || |||||| | ||| ||| || ||||| || | ||| | | || Sbjct 1395327 CTGACGAGATCAAGGTTCTCTACAAGACTGTCTGGGAAATCTCGCAGCGTACCATCATCC 1395386 Query 55779 ACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGG 55838 | ||| |||||| |||||||| | |||||| ||||| ||||||||||||||| |||| Sbjct 1395387 AGATGGCTGCTGACCGTGGTGCCTTCATCGATCAGTCTCAGTCTCTGAACATCCACATGA 1395446 Query 55839 AGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCA 55898 || | ||| | ||| |||| | | || |||||||| || |||||| || |||| Sbjct 1395447 AGGAGCCTACTATGGGCAAGATCACATCCATGCACTTCGCTGGATGGAAGCTTGGCCTCA 1395506 Query 55899 AGACGGGTATGTACTATCTGCGGACC 55924 |||| || |||||||| || || ||| Sbjct 1395507 AGACCGGAATGTACTACCTCCGAACC 1395532 >seq1 Length=4966325 Score = 105 bits (116), Expect = 7e-18 Identities = 286/426 (67%), Gaps = 9/426 (2%) Strand=Plus/Minus Query 117149 AACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAG 117208 ||||| || |||||||| || || || | || ||||| || | ||||| ||| | Sbjct 3061653 AACCC-GTACCGATACCACTTGAGCCGTTGACAAGGATCATTGGAAGCACAGGCACGAAC 3061595 Query 117209 AACTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTC 117268 | ||||||||| | |||| ||||| | | || || || | |||| || || Sbjct 3061594 ATCTCAGGCTCAATCTGCTTGCCGTCCGACTCTCCATATTTCAGAAGAGCATCATC-CTG 3061536 Query 117269 GGATCGAATATGTTCTTGGTCCAC-GGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGC 117327 || ||| | ||| || | | || | ||| || ||| | | ||||||| ||| || Sbjct 3061535 GGCGTGAAAAAGTTTGCGGGCGAAAGGCGATAGACGTGTGTAGGTATAACGAGCGCTGGC 3061476 Query 117328 AGCATCCTTGCCACCA-GCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCA 117386 |||||| | ||||| |||| ||| | |||||| | ||||| ||||||||| ||| | Sbjct 3061475 AGCATCGCTACCACCCTGCAA-ACGTGAACCGAAGTTACCACTTGGCTCCAAGCAGTTGA 3061417 Query 117387 GGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCT 117446 |||||| | || |||||||| ||||||| | || || ||||| | | || | Sbjct 3061416 TGTTGTTCGAACCGACAAAGTTCTGAGCCATACCAATGATTGTGCCTTGCATGGAGGCTT 3061357 Query 117447 CACCATGGTGATACGCCGTCTGCTCC-GCCACGTAGCCCGCCAGCTGAGCCACCTTCATG 117505 |||| ||| ||| |||| || || | ||| | || || | || | | ||||| | | Sbjct 3061356 CACCGTGGGCATAGTCCGT-TGAGCCAGACACTGAACCTGCTAACTCAACAACCTTGACG 3061298 Query 117506 TC-TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAG 117564 || | || | ||| | ||| ||||| |||| ||||||||||||| |||||| | Sbjct 3061297 TCCTTGCGG-ATGTTGCGCCTGAAGCAGGTGTAAAGAACCTTGCGCTGACCTGGCTTGAA 3061239 Query 117565 ACCATC 117570 ||| || Sbjct 3061238 ACCGTC 3061233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214447274600