Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 158 1e-33 seq3 156 5e-33 seq2 118 1e-21 seq4 104 3e-17 >seq1 Length=4966325 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || || | ||||||||||| | Sbjct 2851399 ATGCAAATCTTCGTCAAGACACTCACCGGCAAGACCATCACATTGGAGGTTGAGTCTAGC 2851340 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| |||| || ||||| |||||||| || || || |||||| Sbjct 2851339 GACACGATCGACAACGTCAAGTCTAAGATCCAGGATAAGGAGGGTATCCCACCTGACCAG 2851280 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| |||||||| || || || | || || || | || || || Sbjct 2851279 CAGCGTCTTATCTTTGCGGGTAAGCAGCTGGAAGACGGGCGCACGCTTTCCGATTACAAC 2851220 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || ||||| || || | ||||| || |||||||| Sbjct 2851219 ATCCAGAAGGAGTCGACACTTCACCTGGTTCTTCGTCTGCGTGGTGGACA 2851170 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || ||||||||||| || || ||||||||||| Sbjct 2851627 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACTATCACGCTGGAGGTTGAGTCGTCG 2851568 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || ||||||||||||||||| || ||||| |||||| Sbjct 2851567 GACACGATCGACAACGTAAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCAG 2851508 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| | ||||| | || || || | ||||| || Sbjct 2851507 CAGCGTCTCATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACACTTTCGGACTACAAC 2851448 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || | |||||||| ||||| Sbjct 2851447 ATCCAGAAGGAGTCGACGCTCCACTTGGTGCTCCGTCTTCGTGGTGG 2851401 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || || || || |||||| |||| |||| || | ||| | Sbjct 2851831 ACCGGCAAGACCATCACCCTCGAAGTCGAGTCATCCGATACTATTGACAACGTCAAGTCC 2851772 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| ||||||||||| ||||| |||||||||||||| | || || || || ||| Sbjct 2851771 AAGATTCAAGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAG 2851712 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| ||||| || | ||||| || | || ||||| ||||| || || Sbjct 2851711 CAGCTTGAGGATGGCCGTACACTCTCTGACTACAACATTCAGAAGGAGTCCACACTGCAC 2851652 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||||||| |||||||| Sbjct 2851651 CTCGTTCTGCGTCTGCGCGGTGG 2851629 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| || || |||||||| ||||| |||| ||| | || | ||| Sbjct 2852114 ACCGGTAAGACGATCACCCTTGAGGTGGAGTCTTCAGATACCATCGACAACGTCAAGAGC 2852055 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||| || |||||||| ||||||||||| | || || ||||| ||| Sbjct 2852054 AAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGCTTGATCTTCGCTGGCAAG 2851995 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| ||||| ||| | || || || |||| ||||| || || || || Sbjct 2851994 CAGCTTGAGGATGGACGTACTCTATCCGATTACAACATCCAGAAGGAGTCTACCCTCCAC 2851935 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || ||||| ||||| Sbjct 2851934 CTTGTCCTCCGCCTTCGTGGTGG 2851912 Score = 84.2 bits (92), Expect = 2e-11 Identities = 275/424 (65%), Gaps = 10/424 (2%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 ||||| ||||||| ||||||||||| | ||| ||||| ||| | ||| | Sbjct 3061233 GACGGTTTCAAGCCAGGTCAGCGCAAGGTTCTTTACACCTGCTTCAGGCGCAACATCCGC 3061292 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCAC 32103 | ||| | ||||| | || | | || | ||| | | ||||| |||| |||| Sbjct 3061293 AAGGACGTCAAGGTTGTTGAGTTAGCAGGTTCAGTGTCTGGCTCAACGGACTATGCCCAC 3061352 Query 32104 GGCGAGGCGTCGCTCCAGGGCAC---CATTGTCAACCTTGCTCAGAACTTTGTCGGTGCA 32160 || || || || | || ||||| ||||| | | |||||||||||||||||| | Sbjct 3061353 GGTGAAGCCTCCATGCAAGGCACAATCATTGGTA---TGGCTCAGAACTTTGTCGGTTCG 3061409 Query 32161 AATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAG 32220 || ||| | |||| | |||||| ||| | || || | || | ||||| | Sbjct 3061410 AACAACATCAACTGCTTGGAGCCAAGTGGTAACTTCGGTTCACGTTTGCAGGGTGGTAGC 3061469 Query 32221 GATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTC 32280 |||||||| ||| | ||||| | || ||| ||||| | |||| | ||||| |||| Sbjct 3061470 GATGCTGCCAGCGCTCGTTATACCTACACACGTCTATCGCCTTTCGCCCGCAAACTTTTT 3061529 Query 32281 GACCCGTCGGACGATGCGGTGCTCAAGTA--CAATTTTGATGACGGTCAGCGGGTCGAGC 32338 || | ||| ||||| | || || || | | | ||||| ||| | | |||| Sbjct 3061530 CACGCCCAGGATGATGCTCTTCTGAAATATGGAGAGTCG--GACGGCAAGCAGATTGAGC 3061587 Query 32339 CGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAA 32398 | | | | | | || |||||||| |||||| | || ||||| || || ||||| | Sbjct 3061588 CTGAGATGTTCGTGCCTGTGCTTCCAATGATCCTTGTCAACGGCTCAAGTGGTATCGGTA 3061647 Query 32399 CGGG 32402 |||| Sbjct 3061648 CGGG 3061651 >seq3 Length=2655511 Score = 156 bits (172), Expect = 5e-33 Identities = 1101/1749 (63%), Gaps = 59/1749 (3%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || || |||||||| || ||||||||||| |||||| || | |||||| || Sbjct 1395531 GTTCGGAGGTAGTACATTCCGGTCTTGAGGCCAAGCTTCCATCCAGCGAAGTGCATGGAT 1395472 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | || || | || |||| |||||||||||||||||||||| |||| Sbjct 1395471 GTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTCAGAGACTGAGACTGATCGATG 1395412 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATAC---- 80213 || || ||||| || || ||||| | || || | || | |||||||| || Sbjct 1395411 AAGGCACCACGGTCAGCAGCCATCTGGATGATGGTACGCTGCGAGATTTCCCAGACAGTC 1395352 Query 80214 -TGTACGATACACCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTG---CCAC 80269 |||| || | ||||| | ||| || ||||||| | | || || |||| Sbjct 1395351 TTGTA-GAGA-ACCTTG---ATCTCGTCAGGAATGTTAGGGATGCGCTGGATGGATCCAC 1395297 Query 80270 CGTCCTTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTT 80329 | || | || | || |||| | ||||||| ||| | | | || || | Sbjct 1395296 CCTCGGCAATGATGCGGTTCTTCATGTTCTCGGTCCAGAGACCCATGTCGACAAGGTCCT 1395237 Query 80330 TCA-----CAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA-T 80383 | | ||||| ||| || | || ||||||| ||||| ||||| ||| | Sbjct 1395236 TGAGCAACCAAGGG--TTGACAACCTGGA---ACTCTCCAGCGAGCACACGACG-AGAGT 1395183 Query 80384 ACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCG 80443 | | ||| | ||||| ||||| || ||||||||| || || ||||| | || | Sbjct 1395182 AAATGTTCGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTAGAGG 1395123 Query 80444 CCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGC 80503 | || ||||| || | || | ||| ||||| || | |||| || || ||| || | Sbjct 1395122 CTGTAGGCATAGGCGCAACGAGCAGAGAATTGCGGACACCGTACTG--TGCAATCTTCTC 1395065 Query 80504 GCAAATCT-GACCAAAAATCA-ACCCCAACGC-TGTGAC--CCCACATGTCGTGCTGCAA 80558 | | | || | || | || | |||||| |||||||||||| ||| || Sbjct 1395064 CTTCAGCGAGGCCCAGTCCCAGAGGTCAGTGGGTGTGACGCCCCACATGTCGTACTG-AA 1395006 Query 80559 GATG-CCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCA 80617 | || |||| ||| | || || ||| || |||| || ||||| | ||| ||| Sbjct 1395005 GCTGGCCCTGCGAGACAGGGGAGCCCTCGTACGTAGTATAGGGGCCAAACTCCTTAGCCG 1394946 Query 80618 GCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACAC 80677 ||| || || | | ||| ||||| || || ||| |||| |||| | Sbjct 1394945 TCTCGCAAGAAGAGGTCAAGGCGGCGTGGTAGATAGTCTCGAAGATCTGGGTGTTGAGTT 1394886 Query 80678 CGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCT 80737 |||| || ||||| | || || | | ||| ||||||| || |||| Sbjct 1394885 TCTTAGCCTCAGGCGACTCGAAGGGCAGGCGAAGAGCGAGGAAAGCGTCAGCAAGACCCT 1394826 Query 80738 GAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGT 80797 | || || | | || || | ||| || ||| || |||||| || ||||| Sbjct 1394825 GGACACCAAGACCAATAGGCCTGTGACGGAAGTTGCTGCGGCGTGCCTCCTCAACTGGGT 1394766 Query 80798 AAAAGTTATTA---TCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCAT 80854 | || ||| ||||||| ||| ||||||||||| ||| | || || | Sbjct 1394765 A---GTGATTGACCTCGATGATCTTGTTGAGGTTGCGTGTGCAGACCTGGACGACCTCGT 1394709 Query 80855 GAAGTTTCTGAAAGTCGAATTGGTTCCCCTTC------ACAAATGCCGGAAGGCTCAGGG 80908 |||| |||| || ||||| | | ||| || || | ||||| | || Sbjct 1394708 GAAGCTTCTTGAAATCGAACTCTCCGCGCTTGTAATCGACGAAAGAGGGAAGAGCGACGG 1394649 Query 80909 ACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACA 80968 | ||||| ||||| || || ||||| || | | || | |||| ||| || ||||| | Sbjct 1394648 AAGCCAGGTTGCAGACAGCGACCTCATCCGGTGCAGTGTATTCGATGATCTCAGTGCAGA 1394589 Query 80969 AATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCT 81028 || || || ||||| ||||| |||||||| ||| |||| ||| |||| Sbjct 1394588 GGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATCCT 1394529 Query 81029 TGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCT 81088 ||||| |||| | ||| |||| |||||| ||| | || || ||||||| ||| | || Sbjct 1394528 TGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATGGCGTACCAGAGCT 1394469 Query 81089 CGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGT 81148 | || ||| || || || || | | ||||| ||||| | Sbjct 1394468 TCTGAGCACGGACAGTCTCACGACCCTTACCAAGCTTCTCGTACTTCTCGTAAAGGGCAA 1394409 Query 81149 CGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCC 81208 |||||| | |||| || |||| |||| | ||||||||||| |||||||| || || Sbjct 1394408 CGAACTCATCGCCGTAAACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGAGTCC 1394349 Query 81209 AGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCG-TCAGGGATCCAGAGGGCGGTGAAC 81267 | ||| || | || ||| || ||| |||| | || || ||||| || ||| ||| Sbjct 1394348 ACTCGCCGTTCTCCTGGACACGCTGCAT-AAAGAGATCGGGAATCCACAGAGCGTAGAAG 1394290 Query 81268 AGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCAT 81326 || ||||| ||| || ||||||| | || ||||| | || ||||| ||| | | Sbjct 1394289 AGATCGCGAGCA-CGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCCGAA 1394231 Query 81327 GATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACC 81383 || ||| || ||||| ||||| || || | ||| | | || ||| |||||| Sbjct 1394230 GACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAATGCACCAGGGCGCTTGTTGCCACC 1394171 Query 81384 CTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGA 81443 ||||| ||| || |||||||| ||| | ||||| | ||| || || | ||| | || Sbjct 1394170 CTGGTCGACATAGCGGGCAGTGTTGTTGTAAACACGGAGCATGGGAATCAGACCGTTCGA 1394111 Query 81444 CTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGA 81501 ||||| || || ||||| || || |||| || | | || ||| || Sbjct 1394110 TGTTCCGTTGGTTCCTCCGATATAGGAGCCAGTGGCACGAATGCGGTGGACGTTG--AGG 1394053 Query 81502 CCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCC 81561 || || || || | ||| || ||| || || || | || || || || ||| Sbjct 1394052 CCAATACCGCCAGCAGTCTTGGAGATCAACGCGCATGTCTTGAGTGTGTCGTAGATACCC 1393993 Query 81562 TCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG 81621 || ||||| |||| |||||||| | | ||| ||| ||||||||| ||| || Sbjct 1393992 TCAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGTGGGGACGGTGTA 1393933 Query 81622 CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAG 81681 || || ||||| || || || | |||||| |||| || | ||||| ||| || Sbjct 1393932 CCAGCGTTGAAGAGCGTCGGCGACGCGTGTGTGAAGTACTTCTGCGACATGTAGTCGTAT 1393873 Query 81682 GTTTC-CTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACAT 81740 || || | | | | | || || || ||| || || | ||| |||||||| | ||| Sbjct 1393872 GTCTCGATAGCCTTCTCG-ATGTCCTCCATGTGGATGCCAACAGCGACACGCATGAGCAT 1393814 Query 81741 GTACTGGGG 81749 || |||||| Sbjct 1393813 GTGCTGGGG 1393805 >seq2 Length=3786261 Score = 118 bits (130), Expect = 1e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| || || Sbjct 2400580 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATC 2400639 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| |||||||| | ||||| || | ||||| || |||| ||||| Sbjct 2400640 TTCGCCGGCAAGCAGCTCGAGGACGGCCGTACTCTTTCCGACTACAACATCCAGAAGGAG 2400699 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||||||| | ||| | ||||| || ||||| Sbjct 2400700 TCGACTCTTCACTTGGTCCTCCGTCTCCGTGGTGG 2400734 >seq4 Length=1737036 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| ||||| || |||||||||||||| || || ||||| ||||| || ||| Sbjct 1018737 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAG 1018796 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || || || | ||||| || |||| ||||| || ||||| || || || | Sbjct 1018797 GATGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTCCACCTGGTGCTC 1018856 Query 27619 CGTCTTCGCGGTGGA 27633 || || || |||||| Sbjct 1018857 CGCCTGCGTGGTGGA 1018871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308781744240