Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1 127 2e-24 >seq1 Length=4966325 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| |||| || || || || || |||| Sbjct 2851627 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACTATCACGCTGGAGGTTGAGTCGTCG 2851568 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || ||||| ||||| || || || || || || || Sbjct 2851567 GACACGATCGACAACGTAAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCAG 2851508 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || ||||| ||| | || |||| || |||||| Sbjct 2851507 CAGCGTCTCATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACACTTTCGGACTACAAC 2851448 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || ||||| | ||| | || ||||| || Sbjct 2851447 ATCCAGAAGGAGTCGACGCTCCACTTGGTGCTCCGTCTTCGTGGTGGTAT 2851398 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 ||||||||||| | || || || ||||| || | ||||| | ||||| | ||||| Sbjct 2851833 TGACCGGCAAGACCATCACCCTCGAAGTCGAGTCATCCGATACTATTGACAACGTCAAGT 2851774 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || ||||||||||| || ||||| || || || || ||||| || || | |||||||| Sbjct 2851773 CCAAGATTCAAGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCA 2851714 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | || | || || | || | || || ||||||||||| |||||||| || | | Sbjct 2851713 AGCAGCTTGAGGATGGCCGTACACTCTCTGACTACAACATTCAGAAGGAGTCCACACTGC 2851654 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | | ||| ||||| |||| ||||| || Sbjct 2851653 ACCTCGTTCTGCGTCTGCGCGGTGGTAT 2851626 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||||||| | || || | || || || | | Sbjct 2851399 ATGCAAATCTTCGTCAAGACACTCACCGGCAAGACCATCACATTGGAGGTTGAGTCTAGC 2851340 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || || || || || || || ||||| || || Sbjct 2851339 GACACGATCGACAACGTCAAGTCTAAGATCCAGGATAAGGAGGGTATCCCACCTGACCAG 2851280 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || |||||||| | || |||||||||||||| Sbjct 2851279 CAGCGTCTTATCTTTGCGGGTAAGCAGCTGGAAGACGGGCGCACGCTTTCCGATTACAAC 2851220 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| | || ||||| | ||| |||| ||||| Sbjct 2851219 ATCCAGAAGGAGTCGACACTTCACCTGGTTCTTCGTCTGCGTGGTGG 2851173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917165919040