Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 176 1e-38 seq2 118 2e-21 seq3 100 7e-16 seq4 93.3 1e-13 >seq1 Length=4966325 Score = 176 bits (194), Expect = 1e-38 Identities = 159/200 (80%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||||||||| || || ||||| || |||||||| ||||| | || || Sbjct 2851917 ACGAAGGCGGAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCGGATAGAGT 2851976 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||| || ||||||||||| |||||||| | ||| || ||||||||||||| || Sbjct 2851977 ACGTCCATCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCC 2852036 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| || ||||| |||||||| || || || ||||| || Sbjct 2852037 TTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCTGAAGACTCCACCTCAAG 2852096 Query 211073 AGTGATCGTCTTTCCCGTGA 211092 ||||||||||| || |||| Sbjct 2852097 GGTGATCGTCTTACCGGTGA 2852116 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| || || ||||| || |||||||| || |||| ||| || Sbjct 2851406 ACGAAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGTGT 2851465 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || |||| ||||||||| |||||||| || || || ||||| ||||| | || Sbjct 2851466 GCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACC 2851525 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || ||||| ||||| ||||| || |||||||| || Sbjct 2851526 CTCCTTGTCCTGAATCTTCGACTTTACGTTGTCGATCGTGTCCGACGACTCAACCTCCAG 2851585 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || || ||||| || || | |||||| Sbjct 2851586 CGTGATAGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 2851627 Score = 150 bits (166), Expect = 4e-31 Identities = 163/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| || ||||| || |||||||| ||||| | ||| || | || ||| Sbjct 2851188 AGAACCAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGCCCGTCT 2851247 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || |||||||| || || |||||||| || | || ||||| ||| Sbjct 2851248 TCCAGCTGCTTACCCGCAAAGATAAGACGCTGCTGGTCAGGTGGGATACCCTCCTTATCC 2851307 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTCGAGAGTGATC 211079 |||||||| || ||||| ||||| ||||| ||| |||||||| | ||||| Sbjct 2851308 TGGATCTTAGACTTGACGTTGTCGATCGTGTCGCTAGA---CTCAACCTCCAATGTGATG 2851364 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| ||||| || || | ||||| Sbjct 2851365 GTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 2851399 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || || ||||| || || | || || | ||||| Sbjct 2851644 AGAACGAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGTGTACGGCCATCC 2851703 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| || |||| || |||||||| Sbjct 2851704 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCT 2851763 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || || || || || || || ||||| ||||| ||| Sbjct 2851764 TGAATCTTGGACTTGACGTTGTCAATAGTATCGGATGACTCGACTTCGAGGGTGATGGTC 2851823 Query 211083 TTTCCCGT 211090 || || || Sbjct 2851824 TTGCCGGT 2851831 >seq2 Length=3786261 Score = 118 bits (130), Expect = 2e-21 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||||||| ||||| || |||||||| || || | ||| || | || || Sbjct 2400719 AGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCGTCC 2400660 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || ||||| || |||| || ||||||||| Sbjct 2400659 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 2400600 Query 211023 TGGATCTT 211030 |||||||| Sbjct 2400599 TGGATCTT 2400592 >seq3 Length=2655511 Score = 100 bits (110), Expect = 7e-16 Identities = 186/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152 |||||| ||||||||||| ||| ||||| ||||| |||||||| | || Sbjct 1394563 GTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTACCAGT 1394504 Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212 ||| | |||||| | |||||| | ||| |||| ||| || |||||||||| | Sbjct 1394503 CTCGGTCTGAGCCTCAAGAATGGCGTACCAGAGCTTCTGAGCACGGACAGTCTCACGACC 1394444 Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272 || || ||||||||||| | ||| || | |||| || || || || ||| | Sbjct 1394443 CTTACCAAGCTTCTCGTACTTCTCGTAAAGGGCAACGAACTCATCGCCGTAAACGTCAGC 1394384 Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTT 178332 ||| ||||| ||| |||||||| | |||| |||||| |||| |||| || || | Sbjct 1394383 GAGGCCGGGGCACTCGTTGGGGCACATGAGAGTCCACTCGCCGTTCTCCTGGACACGCTG 1394324 Query 178333 CATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 ||| ||||| || | |||| | || ||||| Sbjct 1394323 CATAAAGAGATCGGGAATCCACAGAGCGTAGAA 1394291 >seq4 Length=1737036 Score = 93.3 bits (102), Expect = 1e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||| ||||| || |||||||| || || | || || | ||||| Sbjct 1018855 AGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCC 1018796 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| || || || ||||| || |||| || |||||||| Sbjct 1018795 TCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 1018737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159148628678855