Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 >seq1 Length=4966325 Score = 111 bits (122), Expect = 1e-19 Identities = 144/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || ||||||| ||| || || |||| || ||||| || |||||||| Sbjct 2851208 CTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGCCCGTCTTCCAGCTGCTTACCCGCAAA 2851267 Query 39153 TATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 ||||||||||||||||| |||||| | | ||| || ||| ||| || |||| || Sbjct 2851268 GATAAGACGCTGCTGGTCAGGTGGG-ATACCCTCCTTATCCTGGATCTTAGACTTGA-CG 2851325 Query 39212 TCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 | | | | ||| ||||| ||||| || |||| ||||| | || || || || || || Sbjct 2851326 TTGTCGATCGTGTCGCTAGACTCAACCTCCAATGTGATGGTCTTGCCGGTGAGTGTCTTG 2851385 Query 39271 ACAAAGATTTGCAT 39284 || ||||||||||| Sbjct 2851386 ACGAAGATTTGCAT 2851399 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || || || || || | |||||| || |||| || Sbjct 2851418 CACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGTGTGCGGCCGTCCTC 2851477 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | ||| ||||| || || || |||||||||||||| | || | | ||| |||||| Sbjct 2851478 CAACTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTG 2851537 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||| || | ||| | | | ||| || |||||| || |||| ||||||| | | Sbjct 2851538 AATCTTCGACTTTA-CGTTGTCGATCGTGTCCGACGACTCAACCTCCAGCGTGATAGTCT 2851596 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || || ||||| ||||| Sbjct 2851597 TGCCAGTCAGGGTCTTGACGAAGATCTGCAT 2851627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544411635251