Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3 154 2e-32 seq19 84.2 3e-11 >seq3 Length=2655511 Score = 154 bits (170), Expect = 2e-32 Identities = 402/605 (66%), Gaps = 6/605 (1%) Strand=Plus/Minus Query 77928 AATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAG 77987 || ||||| || |||| ||| | | || ||||| || || |||||||| | | ||| Sbjct 1394406 AACTCATCGCCGTAAACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGAGTCCAC 1394347 Query 77988 TCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGA 78047 || || | |||| || || | |||||||||||| || ||||| ||||| || ||| Sbjct 1394346 TCGCCGTTCTCCTGGACACGCTGCATAAAGAGATCGGGAATCCACAGAGCGTAGAAGAGA 1394287 Query 78048 TCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATA 78107 || || | | | || || || || ||||| | || ||||| || | | | Sbjct 1394286 TCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCCGAAGACG 1394227 Query 78108 TCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGA 78167 |||| ||||| || || || || || || | | ||||| || || || || ||||| Sbjct 1394226 TCAGCGTGCCACGGCTCGAGGTAGATGGCAAATGCACCAGGGCGCTTGTTGCCACCCTGG 1394167 Query 78168 TCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTT 78227 || | ||| | ||| ||||| || ||||| | | ||| ||||| | |||||| |||||| Sbjct 1394166 TCGACATAGCGGGCAGTGTTGTTGTAAACACGGAGCATGGGAATCAGACCGTTCGATGTT 1394107 Query 78228 CCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATT 78287 || || ||||| ||||| ||| | || ||||| | | | || || Sbjct 1394106 CCGTTGGTTCCTCCGATATAGGAGCCAGTGGCACGAATGCGGTGGACGTTGAGGCCAATA 1394047 Query 78288 CCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATA 78347 || || || |||| || || | ||||| || | ||| |||||||||||||| || Sbjct 1394046 CCGCCAGCAGTCTTGGAGATCAACGCGCATGTCTTGAGTGTGTCGTAGATACCCTCAATG 1393987 Query 78348 CTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGA-ACAGTTCCTGC 78406 ||||| ||| |||||| | || || ||| ||||| || || || || || || Sbjct 1393986 CTGTCTTCCTTCATGTCGATGAGGAAGCAGGATGACATCTG-TGGGGACGGTGTACCAGC 1393928 Query 78407 ATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA-AAGTAGATTGTATGTTT 78465 || || | ||||| || || || || || | || | || | |||| | |||||| | Sbjct 1393927 GTTGAAGAGCGTCGGCGACGCGTGTGTGAAGTACTTCTGCGACATGTAG-TCGTATGTCT 1393869 Query 78466 CAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAACATATGC 78524 | ||||| || |||||| | || || || || || || |||||||| | ||| ||| Sbjct 1393868 CGATAGCCTTCTCGATGTCCTCCATG-TGGATGCCAACAGCGACACGCATGAGCATGTGC 1393810 Query 78525 TGAGG 78529 || || Sbjct 1393809 TGGGG 1393805 >seq19 Length=853957 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/167 (71%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || ||||||||||||||||| || ||||| || || ||||| || || | |||| Sbjct 675985 TCGTTGGAGAATGTGAGACCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGACGCG 676044 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || || ||| ||||| || ||||| ||||| || || || || | | || || Sbjct 676045 AACGAACCACTGAAGAAGATACCTTCAACGGCGGCGAAAGCAACGAGACGGTTGGCGAAA 676104 Query 48303 CTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTT 48346 ||| | |||| ||||| || | ||||| ||||||||||| Sbjct 676105 GTGGAGTTCTTGTCAGAAATCCATCGCAGGGCCCAGTCAGCCTTCTT 676151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666828877280