Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3 141 1e-28 >seq3 Length=2655511 Score = 141 bits (156), Expect = 1e-28 Identities = 405/613 (66%), Gaps = 10/613 (2%) Strand=Plus/Minus Query 76523 AATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCAC 76582 || ||||| || |||| ||| | | || || || || || || ||||| | | |||| Sbjct 1394406 AACTCATCGCCGTAAACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGAGTCCAC 1394347 Query 76583 TCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGA 76642 || || | |||| || || | |||||||||||| || ||||| ||||| || ||| Sbjct 1394346 TCGCCGTTCTCCTGGACACGCTGCATAAAGAGATCGGGAATCCACAGAGCGTAGAAGAGA 1394287 Query 76643 TCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATA 76702 || || | | | || || || || ||||| | || || ||||| | | | Sbjct 1394286 TCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCCGAAGACG 1394227 Query 76703 TCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGA 76762 |||| ||||| || || || || || || | |||| || || || || || ||||| Sbjct 1394226 TCAGCGTGCCACGGCTCGAGGTAGATGGCAAATGCACCAGGGCGCTTGTTGCCACCCTGG 1394167 Query 76763 TCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTA 76822 || | ||| | ||||||||| || ||||| | | ||| ||||| | ||||| ||||| Sbjct 1394166 TCGACATAGCGGGCAGTGTTGTTGTAAACACGGAGCATGGGAATCAGACCGTTCGATGTT 1394107 Query 76823 CCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATT 76882 || || ||||| ||||| ||| |||||||| | ||||| || Sbjct 1394106 CCGTTGGTTCCTCCGATATAGGAGCCAGTGGCACGAATGCGGTGGACGTTGAGGCCAATA 1394047 Query 76883 CCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATA 76942 || || || | || ||||| | || || || | |||||| ||||| ||||| || Sbjct 1394046 CCGCCAGCAGTCTTGGAGATCAACGCGCATGTCTTGAGTGTGTCGTAGATACCCTCAATG 1393987 Query 76943 CTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGA-ACAGTTCCTGC 77001 || || ||| |||||| | || || ||| ||||| || || || || || || Sbjct 1393986 CTGTCTTCCTTCATGTCGATGAGGAAGCAGGATGACATCTG-TGGGGACGGTGTACCAGC 1393928 Query 77002 ATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA-AAGTAGATTGTATGTTT 77060 || || | || || || || || ||||| | || | || | |||| | |||||| | Sbjct 1393927 GTTGAAGAGCGTCGGCGACGCGTGTGTGAAGTACTTCTGCGACATGTAG-TCGTATGTCT 1393869 Query 77061 CAATAACTGCTTCT--ATATCC-CATTGATGAATTCCTACAGCGACACGCATCAACATAT 77117 | ||| | ||||| || ||| | || || || || |||||||||||||| | ||| | Sbjct 1393868 CGATAGC--CTTCTCGATGTCCTCCATG-TGGATGCCAACAGCGACACGCATGAGCATGT 1393812 Query 77118 GCTGAGGTCGTTC 77130 |||| || || || Sbjct 1393811 GCTGGGGGCGCTC 1393799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712932377048640