Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1 105 2e-17 seq2 84.2 5e-11 >seq1 Length=4966325 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| || || |||||||| || |||||||||||||||| || ||| | ||||| Sbjct 2851926 GAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCGGATAGAGTACGTCCATC 2851985 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || |||||||| | | ||||||||| | | || |||||||| || Sbjct 2851986 CTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 2852045 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | | |||||| ||| || ||||| || || || Sbjct 2852046 CTGGATCTTGCTCTTGACGTTGTCGATGGTATCTGAAGACTCCACCTCAAGGGTGATCGT 2852105 Query 152072 TTTGCCCGTGA 152082 || || |||| Sbjct 2852106 CTTACCGGTGA 2852116 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| || ||||| || |||||||||||||||| | || | ||| ||| Sbjct 2851188 AGAACCAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGCCCGTCT 2851247 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || |||||||| | ||||||||| | | ||| || ||||| || Sbjct 2851248 TCCAGCTGCTTACCCGCAAAGATAAGACGCTGCTGGTCAGGTGGGATACCCTCCTTATCC 2851307 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | |||| | ||| || || | || || || Sbjct 2851308 TGGATCTTAGACTTGACGTTGTCGATCGTGTCGCTAGACTCAACCTCCAATGTGATGGTC 2851367 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||| ||||||| ||||| Sbjct 2851368 TTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 2851399 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||||||||| || | | || | || || || | Sbjct 2851421 CAAG-TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGTGTGCGGCCGTCCTCCA 2851479 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||||||||| || | ||||||||||| | ||| || ||||| || |||| Sbjct 2851480 ACTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGAA 2851539 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | |||| || ||| || || || || ||||| |||| Sbjct 2851540 TCTTCGACTTTACGTTGTCGATCGTGTCCGACGACTCAACCTCCAGCGTGATAGTCTTGC 2851599 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| ||||||| |||||| Sbjct 2851600 CAGTCAGGGTCTTGACGAAGATCTGCAT 2851627 >seq2 Length=3786261 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | |||||||| ||||| || ||||||||||| |||| | ||| | Sbjct 2400726 GAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACG 2400667 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || ||||||||||| || | ||||||||||| | || || || Sbjct 2400666 GCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTC 2400607 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 ||| || || || || |||||| | ||| Sbjct 2400606 CTTGTCCTGGATCTTGGACTTGACATTGTCT 2400576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153817444184317