Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 152 1e-31 seq2 98.7 2e-15 >seq1 Length=4966325 Score = 152 bits (168), Expect = 1e-31 Identities = 146/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || ||||||||||| |||||||| ||||| |||||||| |||||||| Sbjct 2852116 TCACCGGTAAGACGATCACCCTTGAGGTGGAGTCTTCAGATACCATCGACAACGTCAAGA 2852057 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| ||||| || ||||| |||||||| || | |||||||| || | Sbjct 2852056 GCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGCTTGATCTTCGCTGGCA 2851997 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| || |||||| | ||||| ||||||| ||| |||| || || || || || | Sbjct 2851996 AGCAGCTTGAGGATGGACGTACTCTATCCGATTACAACATCCAGAAGGAGTCTACCCTCC 2851937 Query 178123 ATCTTGT 178129 | ||||| Sbjct 2851936 ACCTTGT 2851930 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || ||||| || ||||| || || ||| Sbjct 2851624 CAGATCTTCGTCAAGACCCTGACTGGCAAGACTATCACGCTGGAGGTTGAGTCGTCGGAC 2851565 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||||||||| || || ||||||||||||||||| Sbjct 2851564 ACGATCGACAACGTAAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCAGCAG 2851505 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||| | || || || | || ||| | || || ||| || Sbjct 2851504 CGTCTCATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACACTTTCGGACTACAACATC 2851445 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 2851444 CAGAAGGAGTCGACGCTCCA-CTTG 2851421 Score = 107 bits (118), Expect = 5e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||||||||| || || || || || || || |||||||| Sbjct 2851831 ACCGGCAAGACCATCACCCTCGAAGTCGAGTCATCCGATACTATTGACAACGTCAAGTCC 2851772 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||| ||||| || || || || || |||||||| || | ||||||||||| || Sbjct 2851771 AAGATTCAAGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAG 2851712 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || ||||| | || || | || || ||| | || || || || |||||||| Sbjct 2851711 CAGCTTGAGGATGGCCGTACACTCTCTGACTACAACATTCAGAAGGAGTCCACACTGCAC 2851652 Query 178125 CTTGTTTTG 178133 || ||| || Sbjct 2851651 CTCGTTCTG 2851643 >seq2 Length=3786261 Score = 98.7 bits (108), Expect = 2e-15 Identities = 97/124 (78%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || || || ||||||||||| || || ||||||||||| || Sbjct 2400592 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 2400651 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | |||||| |||| || ||| |||| || || || || || || Sbjct 2400652 CAGCTCGAGGACGGCCGTACTCTTTCCGACTACAACATCCAGAAGGAGTCGACTCTTCA- 2400710 Query 178125 CTTG 178128 |||| Sbjct 2400711 CTTG 2400714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203727699023038