Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1 143 2e-29 seq2 127 2e-24 seq4 118 1e-21 >seq1 Length=4966325 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || ||||| ||||||||| ||||| ||||| || Sbjct 2851401 CCACCACGAAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 2851460 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || | ||||||||||||||| || || ||||| ||||||| || Sbjct 2851461 AGTGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 2851520 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || | | ||| | | | ||||| |||||| || Sbjct 2851521 ATACCCTCCTTGTCC-TGAATCTTCGACTTTACGTTGTCGATCGTGTCCGACGACTCAAC 2851579 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| ||| || || || || ||||| ||||| ||||| |||||||| Sbjct 2851580 CTCCAGCGTGATAGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 2851627 Score = 125 bits (138), Expect = 7e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || ||||| ||| ||||||||||||||| ||||| ||| Sbjct 2851629 CCACCGCGCAGACGCAGAACGAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAG 2851688 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||||||||||||||| |||| |||||| ||||| | |||| Sbjct 2851689 AGTGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 2851748 Query 41756 ACGCTCTCCTTGTC 41769 | || ||||||||| Sbjct 2851749 ATGCCCTCCTTGTC 2851762 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| || ||||| || || || | || || ||||||||||| ||||| Sbjct 2851947 CTCCTTCTGGATGTTGTAATCGGATAGAGTACGTCCATCCTCAAGCTGCTTGCCAGCGAA 2852006 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| |||||| ||||| | |||| || ||||||||| ||| || ||| ||| Sbjct 2852007 GATCAAGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGCTCTT-GACGT 2852065 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGT 41838 | | | || || ||||||||||| | || ||||| ||||| || Sbjct 2852066 TGTCGATGGTATCTGAAGACTCCACCTCAAGGGTGATCGTCTTACCGGT 2852114 >seq2 Length=3786261 Score = 127 bits (140), Expect = 2e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| |||||||| Sbjct 2400734 CCACCACGGAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2400675 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| |||||||||||||||||||| ||||||||||| ||||||| |||| Sbjct 2400674 AGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGA 2400615 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||||| ||| || Sbjct 2400614 ATGCCCTCCTTGTCCTGGATCTT 2400592 >seq4 Length=1737036 Score = 118 bits (130), Expect = 1e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || || || | |||||| || || || ||||||||| ||||| ||||| Sbjct 1018874 ACCTCCACCACGCAGGCGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTC 1018815 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 |||||| ||||| | || || ||||||||||| ||||| || || ||||| ||||||| Sbjct 1018814 GGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGG 1018755 Query 41752 GGGAACGCTCTCCTTGTC 41769 ||||| || ||||||||| Sbjct 1018754 GGGAATGCCCTCCTTGTC 1018737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302688212400