Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq289 129 1e-24 >seq289 Length=227737 Score = 129 bits (142), Expect = 1e-24 Identities = 274/405 (68%), Gaps = 8/405 (2%) Strand=Plus/Minus Query 230237 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 230296 ||||||| |||||| ||| ||| | ||||| || ||| | || |||||| ||| Sbjct 105542 CCATCTTCTGGCTGAAGAAGCGTGGTCTTATGCCCGGTCTCACATTCTCCAACGAGCTCA 105483 Query 230297 TCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGC-TTATGTATTCAAAGCTCCAG 230355 || |||||||||||| | || || | | || || || | | || ||| | Sbjct 105482 TCTCTCGCGACGAGGGCATGCA-CACCGACTTTGCTTGCCTTCTCTTCTCTTTGCT---G 105427 Query 230356 AACAAGCTACCATTC---GAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAA 230412 ||||| | ||| | ||| | ||| | ||||| || || || ||| || ||| Sbjct 105426 AACAACCGCCCAAGCAAGGAGGCCGTCGCAGCCATCATCACCGAGGCCGTTACAATCGAG 105367 Query 230413 AAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATG 230472 |||||||| | | || || | || ||| ||| | ||||||||||| | || ||| Sbjct 105366 CAGGAGTTCTTGTCCGATGCCCTGCCTTGTGCCCTGCTCGGCATGAACGCCGGTCTCATG 105307 Query 230473 GGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTG 230532 | |||||||| || ||||| ||||||||| | | | || || || || || Sbjct 105306 TGCCAGTACATTGAGTTCGTCGCCGACCGCCTGCTGCTGGCCCTCGGCAACCCCAAGCAC 105247 Query 230533 TACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAAC 230592 |||||| | | |||||||| | || |||||| ||| || ||| || ||||||||| Sbjct 105246 TACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGCTGGCAAGACCAAC 105187 Query 230593 TTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||||| ||||| || ||||||| |||| | ||||||| ||| Sbjct 105186 TTCTTCGAGAAGCGCGTTGGTGACTACCAGAAGGCTGGTGTCATG 105142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057818700632330