Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq332 152 6e-32 >seq332 Length=679357 Score = 152 bits (168), Expect = 6e-32 Identities = 392/582 (67%), Gaps = 14/582 (2%) Strand=Plus/Plus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||| || || | |||||||| | | |||||| |||| || | ||| || | ||| Sbjct 209653 CCAGGGCACTCGTTGGGACACATAAGGGTCCACTCGCCGTTCTCTTGCACACGCTGCATG 209712 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCC 54099 |||||||| |||||||| | ||| ||| || ||||| | | | | ||||| || || Sbjct 209713 AAGAGATCGGGAATCCACAAAGC-ATAGAAGAGATCGCGAGCACGAACCTCCTCCTTGCC 209771 Query 54100 TGTATTCTTTTTAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATA 54158 ||||| | || |||||||| |||| | | |||| |||||||| || | ||| | Sbjct 209772 GTGGTTCTTCCTCAGGTCGAGGAA-GCCAAAGACGTCAGCGTGCCACGGCTCGAGGTAGA 209830 Query 54159 TGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 54218 ||| | | | ||||| || ||||| || ||||| || | || | |||||||| || | Sbjct 209831 TGGCAAAAGCACCAGGGCGCTTGTTGCCACCCTGGTCGACATAACGGGCGGTGTTGTTGT 209890 Query 54219 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 54278 | || | | ||| ||||| | ||| || |||| || ||||| || || || | Sbjct 209891 AGACACGGAGCATAGGAATCAAACCGTTTGATGTTCCGTTGGTTCCTCCAATGTACGAGC 209950 Query 54279 CACTGGCACGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAA 54336 | |||||||||| | |||| | || || || || || | || ||||| || Sbjct 209951 CGGTGGCACGAATGCGGTGGACGTTGA--GGCCAATACCGCCAGCAGTCTTGGAGATCAA 210008 Query 54337 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 54396 ||||| || | ||| || ||||| ||||| || || || ||| |||||| | || Sbjct 210009 CGCGCAGGTCTTCAGCGTGTCGTAGATACCCTCAATGCTGTCCTCCTTCATGTCGATGAG 210068 Query 54397 AAAACAGCTAGACATTTGGTGACGACTA-GTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 || ||| ||||| || || || || || ||||| || | || || || |||| Sbjct 210069 GAAGCAGGATGACATCTG-TGGGGATGGTGTGCCGGCATTGAAGAGTGTCGGCGACGCGT 210127 Query 54456 GCGTAAACCATTTTTCAGAAA-GTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CA 54513 | || || | || | || | |||| | ||| |||||||| || || || ||| | Sbjct 210128 GTGTGAAGTACTTCTGCGACATGTAG-TCGTATGTCTCGATGGCCTTCTCAATGTCCTCC 210186 Query 54514 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 54555 || || || || || ||||||||||| | ||||||||| || Sbjct 210187 ATG-TGGATGCCAACAGCGACACGCATGAGCATGTGCTGCGG 210227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718698185680