Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq289 196 5e-45 seq308 118 1e-21 seq306 116 4e-21 seq334 100 3e-16 >seq289 Length=227737 Score = 196 bits (216), Expect = 5e-45 Identities = 213/282 (76%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698 |||| |||||||| ||||||||||| || |||||||||| |||||| | || || ||| Sbjct 106049 TGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGATCTCTCC 105990 Query 116699 AAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 |||||| ||||||| | ||| | ||||| ||||||| |||||| ||| Sbjct 105989 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGTTTCTTCATCTCCCAC 105930 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 || || || || ||||| ||| ||||||||| ||||||||||| || |||||||| ||| Sbjct 105929 GTCCTCGCTTTCTTCGCTGCCTCCGACGGCATTGTCAACGAGAACCTTGTCGAGCGCTTC 105870 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 || ||||| ||| | ||||||| || |||||||||||||| ||||| |||||| Sbjct 105869 TCTGGCGAGGTACAGATCCCCGAGGCACGATGCTTCTACGGCTTCCAGATTATGATGGAG 105810 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||| ||| | || | || || |||||||||||| ||| Sbjct 105809 AACGTCCACGCCGAGACATACTCTCTCCTCATCGACACCTAC 105768 Score = 183 bits (202), Expect = 3e-41 Identities = 318/457 (70%), Gaps = 9/457 (2%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 ||||||| || ||||| ||||| |||||| | | || | | |||||| | | |||| Sbjct 105653 AGAAGGCTGATTGGGCCCTGCGATGGATCTCGGACAAGAACTCTACCTTCGCCAACCGCC 105594 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || || ||||| || || || ||| ||||||| || ||||| |||| || | Sbjct 105593 TTGTCGCTTTCGCTGCTGTTGAAGGCATCTTCTTCAGCGGTTCGTTCGCGTCCATCTTCT 105534 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| || || || |||||||| || || ||| ||||||||||||||| | | Sbjct 105533 GGCTGAAGAAGCGTGGTCTTATGCCCGGTCTCACATTCTCCAACGAGCTCATCTCTCGCG 105474 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTG---CAGCGAC 117218 ||||||| |||| ||||||||| || | || ||| |||| || | || | Sbjct 105473 ACGAGGGCATGCACACCGACTTTGCTTGCCTTCTCTTC---TCTTTGCTGAACAACCGCC 105417 Query 117219 CGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCC 117278 | ||| || | |||| | ||| ||||||| || || | ||||||||| ||| Sbjct 105416 CAAGCAAGGAGGCCGTCGCAGCCATCATCACCGAGGCCGTTACAATCGAGCAGGAGTTCT 105357 Query 117279 TCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATAC 117337 | |||| || ||||| |||| ||||| || | || || |||| || ||| Sbjct 105356 TGTCCGATGCCCTGCCTTGTGC-CCTGCTCGGCATGAACGCCGGTCTCATGTGCCAGTAC 105298 Query 117338 ATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACG 117397 || ||||||||||||||| | |||||||| | || | | | |||||||||||||| | Sbjct 105297 ATTGAGTTCGTCGCCGACCGCCTGCTGCTGGCCCTCGGCAACCCCAAGCACTACAACGCC 105238 Query 117398 CCCAACCCGCTGGACTTTATGAACCTCATCTC-CTTG 117433 ||||||| | ||||| ||| | |||||| |||| Sbjct 105237 ACCAACCCCTTCGACTTCATGGAGAACATCTCTCTTG 105201 >seq308 Length=314950 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| |||||||| | || || || | | | Sbjct 275611 ATGCAGATTTTCGTCAAGACACTCACCGGCAAGACCATCACATTGGAGGTTGAGTCTAGC 275552 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || || | ||||| ||||| ||||| | |||||| Sbjct 275551 GACACAATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 275492 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || ||||| || |||| ||||| ||| ||||||||| Sbjct 275491 CAGCGCCTGATTTTCGCAGGAAAGCAGCTTGAGGACGGCCGCACGCTCTCGGACTACAAC 275432 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||||||| |||| ||||| | ||| |||| Sbjct 275431 ATTCAGAAGGAGTCCACTCTGCACTTGGTGCTGCG 275397 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || || || |||||||| |||| ||||| | |||||| | | | |||| | ||| Sbjct 276043 ACCGGAAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCGACAACG-TGAAGTC 275985 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| ||||| || ||| | |||||||| || || |||| ||| || || Sbjct 275984 GAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTTATCTTCGCTGGTAA 275925 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || || | ||||||||| |||||||||||| ||||||||| |||| ||||| Sbjct 275924 GCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCCACACTGCA 275865 Query 40893 TCTAGTGTTGCG 40904 ||| || |||| Sbjct 275864 TCTTGTCCTGCG 275853 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || ||||| | || || || | | Sbjct 275839 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATCACACTTGAGGTTGAGTCGTCG 275780 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| || || ||||||||||| ||||||| Sbjct 275779 GACACAATCGATAACG-TGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCTCCGGACCA 275721 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || || ||||| || |||| || || || ||||||||| Sbjct 275720 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACACTTTCCGACTACAA 275661 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| |||| || || Sbjct 275660 CATCCAGAAGGAGTCCACCCTTCA 275637 >seq306 Length=305464 Score = 116 bits (128), Expect = 4e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| |||||||||| || ||||||| ||| ||||| ||||| || Sbjct 48590 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAG 48649 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| ||| |||||||||||||||||||||| | || || || || ||| | Sbjct 48650 GATGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTCCACCTGGTGCTC 48709 Query 40903 CGCTTGAGGGGCGGCGG 40919 ||| || | || || || Sbjct 48710 CGCCTGCGTGGTGGAGG 48726 >seq334 Length=270071 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| |||||||||| || | |||| ||| ||||| ||||| || Sbjct 22227 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAG 22286 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| ||||| || |||||||||||||||||||||| | || || || Sbjct 22287 GACGGCCGCACTCTTTCCGACTACAACATCCAGAAGGAGTCGACCCTCCA 22336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216681866160