Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq308 116 3e-21 seq306 111 1e-19 seq334 93.3 4e-14 >seq308 Length=314950 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| | || || |||||| Sbjct 275631 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGTGTACGGCCGTCCTCG 275690 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||||||||||||||| || ||||| ||||||||||| || | Sbjct 275691 AGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGA 275750 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||||| ||| ||||| | || | || ||| Sbjct 275751 ATCTTCGACTTCACGTTATCGATTGTGTCCGACGACTCAACCTCAAGTGTGATAGTCTTG 275810 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || || |||||||| Sbjct 275811 CCAGTCAAGGTCTTGACGAAGATCTGCAT 275839 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | || ||||||||| | || ||||| || ||||||||||| || Sbjct 275385 CCTCCGCGCAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAG 275444 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| ||||| ||| | || || |||||||| || || || Sbjct 275445 AGCGTGCGGCCGTCCTCAAGCTGCTTTCCTGCGAAAATCAGGCGCTGCTGGTCAGGTGGG 275504 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| || || || || | |||| ||||| | ||| ||| Sbjct 275505 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATTGTGTCGCTAGACTCAACC 275564 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || |||||||| || || || || ||||||||||| Sbjct 275565 TCCAATGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAATCTGCAT 275611 Score = 98.7 bits (108), Expect = 9e-16 Identities = 134/186 (72%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| || | ||| ||||| || ||||||||||| ||| | ||||| ||| || | Sbjct 275860 CAAGATGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAA 275919 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || |||||| |||| ||||||||||| || || || || ||||||||||| | Sbjct 275920 GCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGA 275979 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | |||| |||||| | ||||||||||| || | || || | Sbjct 275980 TCTTCGACTTCACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTTC 276039 Query 118711 CGGTCA 118716 |||||| Sbjct 276040 CGGTCA 276045 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| || |||||| |||||||||||| Sbjct 276146 GTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCCTCGAGCTG 276205 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || |||| | |||||||| || ||||| ||||| |||||||| || || Sbjct 276206 CTTGCCGGCAAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTT 276265 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||| |||| ||| ||||| | ||| | ||| || ||||| Sbjct 276266 GCTCTTGACGTTGTCGATGGTATCCGAAGACTCCACCTCAAGGGTGATCGTCTTACCGGT 276325 >seq306 Length=305464 Score = 111 bits (122), Expect = 1e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| ||| | |||||| |||||| Sbjct 48706 CACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTC 48647 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 |||||| || || ||| |||||||||||||||| || || || |||||||||||||||| Sbjct 48646 GAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTG 48588 >seq334 Length=270071 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| ||| | |||||| ||||| Sbjct 22342 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCA 22283 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| || |||||| |||| | |||||||| || || || |||||||||||||| Sbjct 22282 AGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 22227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828332662572