Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq308 141 6e-29 seq306 100 2e-16 >seq308 Length=314950 Score = 141 bits (156), Expect = 6e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| |||||||| | |||||||| ||| | ||| || ||||| ||||||||||| || Sbjct 275384 TCCTCCGCGCAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGA 275443 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| |||| || | |||||| ||||||||||| || ||||||||||| || Sbjct 275444 GAGCGTGCGGCCGTCCTCAAGCTGCTTTCCTGCGAAAATCAGGCGCTGCTGGTCAGGTGG 275503 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | || | | || | ||| | || || || Sbjct 275504 GATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATTGTGTCGCTAGACTCAAC 275563 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||||||||| || || || || |||||||| Sbjct 275564 CTCCAATGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAATCTGCAT 275611 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || |||| ||| | || || ||||| |||||||||||||| Sbjct 275613 CCACCGCGGAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 275672 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| || | |||||| || ||||| ||||| ||||||||||| || Sbjct 275673 AGTGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 275732 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || ||||| ||| | | | || | || | ||| || || Sbjct 275733 ATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTATCGATTGTGTCCGACGACTCAACC 275792 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| || | || || || ||||||||||| Sbjct 275793 TCAAGTGTGATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 275839 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| || || || | || || ||||| |||||||||||||| Sbjct 275841 CCACCACGCAGACGCAGGACAAGATGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAG 275900 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||| || ||||| || || ||||||||||| ||| Sbjct 275901 AGGGTGCGGCCATCTTCAAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGGGGA 275960 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | |||| ||| ||||| Sbjct 275961 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTGTCGATGGTGTCGGACGACTCGACC 276020 Query 34343 TCCACCGTGATGGTTTTGCCGGT 34365 || | |||||||| || ||||| Sbjct 276021 TCGAGAGTGATGGTCTTTCCGGT 276043 >seq306 Length=305464 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | ||||||||||| | ||| || ||||| |||||||||||||| Sbjct 48724 TCCACCACGCAGGCGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 48665 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || || | ||||||||| ||||| ||||| ||||||||||| ||| Sbjct 48664 GAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 48605 Query 34282 CACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 48604 AATGCCCTCCTTGTC 48590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070460460960