Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq308 116 3e-21 seq334 86.0 5e-12 >seq308 Length=314950 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| ||| ||||||||||||||||||||| || ||| |||| || Sbjct 275403 ACCAAGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCA 275462 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| |||| ||||| ||||| || || | ||||||||||||| Sbjct 275463 AGCTGCTTTCCTGCGAAAATCAGGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGG 275522 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | | ||| ||||||| || || |||||| Sbjct 275523 ATCTTGGACTTGACATTGTCGATTGTGTCGCTAGACTCAACCTCCAATGTGATGGTCTTG 275582 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || || || ||||| Sbjct 275583 CCGGTGAGTGTCTTGACGAAAATCTGCAT 275611 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| |||||||||||| ||| || |||| || Sbjct 275631 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGTGTACGGCCGTCCTCG 275690 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| ||||| ||||| | |||||||| ||| | Sbjct 275691 AGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGA 275750 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | ||||| ||| ||||| | || || |||||| Sbjct 275751 ATCTTCGACTTCACGTTATCGATTGTGTCCGACGACTCAACCTCAAGTGTGATAGTCTTG 275810 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||| ||||| Sbjct 275811 CCAGTCAAGGTCTTGACGAAGATCTGCAT 275839 Score = 87.8 bits (96), Expect = 1e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| ||| |||| | || || || || || ||||| || Sbjct 276158 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCCTCGAGCTGCTTGCCGGCAAA 276217 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| ||||| ||||| ||||| | || ||||||||| || || ||| || Sbjct 276218 GATCAAGCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGCTCTTGACGTT 276277 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | | | | ||| | ||||||||| | ||| |||||||| || || Sbjct 276278 GTCGATGGTATCCGAAGACTCCACCTCAAGGGTGATCGTCTTACCGGT 276325 >seq334 Length=270071 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||||||| || ||| |||| || Sbjct 22342 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCA 22283 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || ||||| ||||| ||||| ||||| || || | |||||||||||| Sbjct 22282 AGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 22226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073317343211