Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq332 311 8e-80 seq289 123 2e-23 seq308 89.7 5e-13 >seq332 Length=679357 Score = 311 bits (344), Expect = 8e-80 Identities = 647/953 (68%), Gaps = 18/953 (2%) Strand=Plus/Plus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 |||||||| ||||| || || ||||| || | |||||||| | || || || || Sbjct 209383 GAGGCAAGGTTGCAGACAGCAACCTCATCAGGCGCGGTGTACTCGATGATCTCAGTGCAC 209442 Query 23087 AGATT---GCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAA 23143 | ||| ||| | || || || | || |||||||||| || | ||| | | Sbjct 209443 AAATTCGAGCTGCGA---ATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCA 209499 Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 ||||||||||||||| | || | || ||||| ||| | ||| | || || ||| Sbjct 209500 TCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGAGCCTCAAGAATGGCGTACCAG 209559 Query 23204 ATAGTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAA 23262 | ||||||| | ||| ||| | || | | || || | ||||||||| | ||| | Sbjct 209560 AGCTTCTGAGCACGGACA-GTCTCGCGACCACGACCCTCCTTCTCGTACTTCTCGTAAAG 209618 Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322 || | || ||| | ||||| ||| || ||||| || | | | |||||||| || Sbjct 209619 GGCAACGAACTCGTCGCCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGACACATAAG 209678 Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382 ||||| || | || || || ||| || ||||| || ||||| | ||| || Sbjct 209679 GGTCCACTCGCCGTTCTCTTGCACACGCTGCATGAAGAGATCGGGAATCCACAAAGCATA 209738 Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442 ||| || ||||| || || |||||||| |||||| |||||| ||| || | ||| | Sbjct 209739 GAAGAGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCC 209798 Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502 || ||||| || ||||||||||||||||| | |||||| || || || | ||| ||||| Sbjct 209799 AAAGACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGCC 209858 Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562 ||||| ||||| |||||||| ||||||||||| || | ||||| || | | |||||| Sbjct 209859 ACCCTGGTCGACATAACGGGCGGTGTTGTTGTAGACACGGAGCATAGGAATCAAACCGTT 209918 Query 23563 GGACGCGCCGCCTACGCCCGCCACACT-CGAACCTTTTGCTCGAACGTTGTGAACGTGGA 23621 || | ||| | || ||| | ||| || | || |||| | ||| |||| || Sbjct 209919 TGATGTTCCG-TTGGTTCCTCCAATGTACGAGCCGGTGGCACGAATGCGGTGGACGTTGA 209977 Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681 || || || || | | || || |||| |||||| ||||| ||||||||||| | Sbjct 209978 GGCCAATACCGCCAGCAGTCTTGGAGATCAACGCGCAGGTCTTCAGCGTGTCGTAGATAC 210037 Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741 |||| ||||||||||| || | ||| | ||| || || ||||| || | || | Sbjct 210038 CCTCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGTGGGGATGGTG 210097 Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTG 23800 | |||| ||| |||||||| ||||| || ||||| | |||||| ||| | | Sbjct 210098 TGCCGGCATTGAAGAGTGTCGGCGACGCGTGTGTGAAGTACTTCTGCGACATGTAG-TCG 210156 Query 23801 TACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATC 23860 || || |||||||| ||||||||||| ||| || || | ||||| ||||| | | Sbjct 210157 TATGTCTCGATGGCCTTCTCAATGTCCTCCATGTGGATGCCAACAGCGACACGCATGAGC 210216 Query 23861 ATGTATTGAGGTCTCTCG---ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGC 23917 |||| || || | |||| ||| | ||| || || || ||||||||| || | | Sbjct 210217 ATGTGCTGCGGGCGCTCGGCAACCTT---GCCATTGATGCGGAGCAGATATGAGCGCTCC 210273 Query 23918 ATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGC 23970 | || || || || || | | ||||| |||||||| |||| || ||||| Sbjct 210274 AGGGTCTTGAAGCCGAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATGGC 210326 Score = 132 bits (146), Expect = 4e-26 Identities = 381/581 (66%), Gaps = 9/581 (2%) Strand=Plus/Plus Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202 |||| || || || ||||| || ||||| || || | |||||| | ||| || || | Sbjct 208499 TGGTTCGGAGGTAGTACATTCCAGTCTTGAGGCCAAGCTTCCATCCAGCAAAGTGCATGG 208558 Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262 | || | || || | ||| | ||||| | || | |||||| ||| || | Sbjct 208559 ATGTGATCTTGCCCATGGTAGGCTCCTTCATGTGAATGTTCAGAGACTGAGACTGGTCAA 208618 Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322 | || || || || || |||||||| | || | |||||| ||| || ||||| |||| Sbjct 208619 TGAAGGCACCACGGTCAGCGGCCATCTGGATGATGGTACGCTGCGAGATCTCCCAGACGG 208678 Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTAT 22382 ||||||| || | ||||||| || || ||| | ||||| ||| || | Sbjct 208679 TCTTGTAGAGAACCTTGATCTCATCAGGAATGTTAGGGATGCGCTGGATGGATCCACCCT 208738 Query 22383 TGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGA 22442 | ||||| || || || | || |||| | ||| ||| || | ||| |||| Sbjct 208739 CGGCAATGATGCGGTTCTTCATGTTCTCTGTCCAGAGACCCATGTCGACAAGATCCTTGA 208798 Query 22443 CCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTG 22501 || | |||| || || || ||||| || | |||| || || || || ||||| Sbjct 208799 GCAACCAAGGGTTGACGACCTGGAACTCTCCAG-CAAGCACACGACGGGAATAGATGTTC 208857 Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || ||||| | || ||||| || || ||||| | ||| || || || ||| Sbjct 208858 GAGGTGTAAGGCTCGAAGCACTCGTTGTTACCAAGAATCTGGGAGGTAGAGGCAGTGGGC 208917 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATC 22621 || ||||| | || || ||||| | | ||||||| | || || ||| ||| Sbjct 208918 ATGGGCGCAATGAGCAGAGAGTTGCGGACACCGTGCTGGGCGATCTTGTCCTTCAGCGAG 208977 Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC- 22680 | ||||||||| ||||| | || || || | ||||||| ||||| |||| | ||| Sbjct 208978 GCCCAGTCCCAGAGATCAGTGGGGGTGAC---GCCCCACATGTCGTACTGCAGCTGGCCC 209034 Query 22681 -GCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCA 22720 |||| | || |||||||||||| |||| |||||| Sbjct 209035 TGCGAAACA--GGCGAGCCTTCGTACGTAGCGTAAGGACCA 209073 >seq289 Length=227737 Score = 123 bits (136), Expect = 2e-23 Identities = 295/441 (67%), Gaps = 14/441 (3%) Strand=Plus/Minus Query 57960 ACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGC 58019 || |||||| | | || |||| ||||| || || ||||| || ||||| || Sbjct 105609 ACCTTCGCCAACCGCCTTGTCGCTTTCGCTGCTGTTGAAGGCATCTTCTTCAGCGGTTCG 105550 Query 58020 TTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAAC 58079 || ||| | || || ||| ||||||| || || || |||||||| || || || |||| Sbjct 105549 TTCGCGTCCATCTTCTGGCTGAAGAAGCGTGGTCTTATGCCCGGTCTCACATTCTCCAAC 105490 Query 58080 GAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139 ||| | || || ||||||||||| | || || || ||||| ||||| | | |||| Sbjct 105489 GAGCTCATCTCTCGCGACGAGGGCATGCACACCGACTTTGCTTGCCTTCTCTTCTCT--- 105433 Query 58140 ATTG-TCAATAA--ACCGACGC-GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGC 58195 ||| | || || || | || ||| | || | ||| ||||||||||| || | Sbjct 105432 -TTGCTGAACAACCGCCCAAGCAAGGAGGCCGTCGCAGCCATCATCACCGAGGCCGTTAC 105374 Query 58196 GATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGA 58255 ||||| | ||||| | |||| ||||| || ||| ||||||| |||||| | Sbjct 105373 AATCGAGCAGGAGTTCTTGTCCGATGCCCTGCCTTGTGCCCTGCTCGGCATGAACGCCGG 105314 Query 58256 TTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGA 58315 | | |||| ||||||||||||| || |||||| | || |||| | | | || | Sbjct 105313 TCTCATGTGCCAGTACATTGAGTTCGTCGCCGACCGCCTGCTGCTGGCCC---TCGGCAA 105257 Query 58316 GC---GTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGG 58372 | || |||||| | | || || || || || ||| | ||||| || | || Sbjct 105256 CCCCAAGCACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGCTGG 105197 Query 58373 CAAGACAAACTTTTTCGAAAA 58393 |||||| ||||| ||||| || Sbjct 105196 CAAGACCAACTTCTTCGAGAA 105176 >seq308 Length=314950 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| || ||||| | || ||||| |||| Sbjct 275839 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATCACACTTGAGGTTGAGTCGTCG 275780 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||| ||||| ||| | || || |||||| Sbjct 275779 GACACAATCGATAACGTGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCTCCGGACCAG 275720 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| | || ||| || | ||| || ||| Sbjct 275719 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACACTTTCCGACTACAAC 275660 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || || ||||| |||| || Sbjct 275659 ATCCAGAAGGAGTCCACCCTTCACTTGGTTCT 275628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764221316720