Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq332 163 4e-35 >seq332 Length=679357 Score = 163 bits (180), Expect = 4e-35 Identities = 412/611 (67%), Gaps = 14/611 (2%) Strand=Plus/Plus Query 63190 CGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACC 63249 |||||||||| || | || | | | | ||| || || | |||||||| | | || Sbjct 209624 CGAACTCGTCGCCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGACACATAAGGGTCC 209683 Query 63250 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AAT 63308 |||| |||| || | ||| || | ||| |||||||| |||||||| | ||| ||| || Sbjct 209684 ACTCGCCGTTCTCTTGCACACGCTGCATGAAGAGATCGGGAATCCACAAAGC-ATAGAAG 209742 Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63368 ||||| | | | | ||||| || || ||||| | || |||||||| |||| | Sbjct 209743 AGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAA-GCCAAA 209801 Query 63369 -ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 | |||| |||||||| || | ||| ||||| | | | ||||| || ||||| || || Sbjct 209802 GACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGCCACC 209861 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 ||| || | || | |||||||| || || || | | ||| ||||| | ||||||||| Sbjct 209862 CTGGTCGACATAACGGGCGGTGTTGTTGTAGACACGGAGCATAGGAATCAAACCGTTTGA 209921 Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAA--TTGATAGA 63545 | | || ||||| || || || || |||||||||| | |||| | Sbjct 209922 TGTTCCGTTGGTTCCTCCAATGTACGAGCCGGTGGCACGAATGCGGTGGACGTTGA--GG 209979 Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 || || || || || | || ||||| || ||||| || | |||||| ||||| || Sbjct 209980 CCAATACCGCCAGCAGTCTTGGAGATCAACGCGCAGGTCTTCAGCGTGTCGTAGATACCC 210039 Query 63606 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA-GTAGT 63664 || ||||| || || |||||| | || || ||| ||||| || || || | || Sbjct 210040 TCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTG-TGGGGATGGTGT 210098 Query 63665 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA-GTAGATTGT 63723 || ||||| || | || || || ||||| || || | || | || | |||| | || Sbjct 210099 GCCGGCATTGAAGAGTGTCGGCGACGCGTGTGTGAAGTACTTCTGCGACATGTAG-TCGT 210157 Query 63724 ACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAAC 63782 | ||||| || || || || ||| | || || || || || ||||||||||| | | Sbjct 210158 ATGTCTCGATGGCCTTCTCAATGTCCTCCATG-TGGATGCCAACAGCGACACGCATGAGC 210216 Query 63783 ATGTGCTGAGG 63793 |||||||| || Sbjct 210217 ATGTGCTGCGG 210227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814521766480