Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq311 98.7 8e-16 >seq311 Length=328692 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 21111 ACGTAAAACTGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGG 21169 ||||| ||||| | |||| | ||| ||||| || || |||||| ||| || || || Sbjct 189906 ACGTAGAACTG-CGCAAACATGTGGCAAGGCGGCAGTGCCATCTTTTTGAGATCTGCAGG 189848 Query 21170 GTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCAC 21229 ||||| |||| || | || | ||| |||| || || | || | ||| | || Sbjct 189847 ATTCCATGCGCTCAATATAATTCTCCGGTCGTATGGGCGGTTCTTCAGCTTATCAATGAC 189788 Query 21230 GTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGC 21289 | | ||||||||||| || || || ||||| || ||| ||| |||||||||| Sbjct 189787 TTCAGCGAGCTGGTCCACACCTTGCCCTGTGTAGTCTGCATCGTGACCCTTGTACTCCGC 189728 Query 21290 CCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTC 21337 ||||| || | ||| || |||||||| || ||||||||||| ||||| Sbjct 189727 ACCAAAGTGCCGCCATTGAAACCCGTAGACAGGCCCCAGATCTCCCTC 189680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427773961513680